Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RBH91_RS09990 Genome accession   NZ_CP133085
Coordinates   2009645..2010688 (+) Length   347 a.a.
NCBI ID   WP_076760587.1    Uniprot ID   -
Organism   Bacillus swezeyi strain EA208     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2004645..2015688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH91_RS09965 - 2005319..2005576 (+) 258 WP_076760582.1 DUF3243 domain-containing protein -
  RBH91_RS09970 - 2005845..2006636 (+) 792 WP_076760583.1 YmfK family protein -
  RBH91_RS09975 - 2006654..2007559 (+) 906 WP_307894426.1 RodZ domain-containing protein -
  RBH91_RS09980 pgsA 2007621..2008202 (+) 582 WP_307894427.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RBH91_RS09985 cinA 2008224..2009474 (+) 1251 WP_307894428.1 competence/damage-inducible protein A Machinery gene
  RBH91_RS09990 recA 2009645..2010688 (+) 1044 WP_076760587.1 recombinase RecA Machinery gene
  RBH91_RS09995 rny 2011048..2012607 (+) 1560 WP_076760588.1 ribonuclease Y -
  RBH91_RS10000 - 2012694..2013491 (+) 798 WP_307894429.1 TIGR00282 family metallophosphoesterase -
  RBH91_RS10005 spoVS 2013693..2013953 (+) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  RBH91_RS10010 - 2014061..2014981 (+) 921 WP_307894430.1 dipeptidase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37766.86 Da        Isoelectric Point: 4.7734

>NTDB_id=871737 RBH91_RS09990 WP_076760587.1 2009645..2010688(+) (recA) [Bacillus swezeyi strain EA208]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTETRISTVPSGSLALDTALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNEVMGNKT
RIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYQEERLGQGRENAKQFLKENKDILLMIQEQ
IREHYGLDTGGSPASQPEEEAQEELEF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=871737 RBH91_RS09990 WP_076760587.1 2009645..2010688(+) (recA) [Bacillus swezeyi strain EA208]
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCGCTTAAACAAATAGAAAAACAGTTTGGTAAAGGTTCGATTATGAAGCT
CGGCGAACAAACTGAAACAAGAATTTCAACCGTTCCGAGCGGTTCTTTAGCGCTCGATACAGCCCTTGGAGTGGGCGGAT
ATCCGCGCGGCCGGATTATTGAAGTATACGGACCGGAAAGTTCCGGTAAAACGACGGTGGCGCTTCATGCGATTGCCGAA
GTTCAGCAGCAGGGAGGACAGGCGGCATTCATAGATGCCGAACATGCGCTTGATCCGGTTTACGCCCAAAAGCTCGGCGT
CAACATTGACGAGCTGCTGCTGTCACAGCCTGACACAGGAGAACAGGCGCTTGAAATTGCGGAAGCCCTTGTCAGAAGCG
GAGCAGTGGATATCGTTGTCATCGACTCGGTAGCGGCCCTTGTCCCGAAAGCGGAAATCGAAGGAGACATGGGAGACTCC
CATGTCGGCTTGCAGGCCAGACTGATGTCCCAGGCGCTTCGGAAGCTTTCCGGAGCGATCAATAAATCGAAGACCATCGC
GATTTTCATTAACCAAATTCGTGAAAAAGTCGGGGTCATGTTTGGCAATCCGGAGACGACTCCAGGCGGAAGAGCGCTGA
AATTCTACTCTTCTGTGCGCCTTGAAGTGCGCCGTGCCGAACAGCTGAAACAAGGCAATGAGGTCATGGGGAACAAGACG
AGAATTAAAGTCGTGAAAAACAAAGTGGCGCCTCCTTTCCGGACAGCTGAAGTGGACATTATGTACGGTGAAGGGATTTC
AAAAGAAGGAGAAATCATTGACCTTGGAACAGAGCTTGACATCGTGCAAAAAAGCGGATCATGGTACTCTTATCAGGAGG
AACGTCTTGGGCAGGGCCGTGAAAACGCAAAGCAGTTTCTAAAAGAAAACAAAGATATCCTGTTGATGATTCAAGAGCAA
ATCCGGGAGCACTACGGTTTGGATACGGGCGGCAGTCCCGCTTCTCAACCGGAAGAAGAAGCCCAGGAAGAACTCGAATT
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

96.677

95.389

0.922
  recA Latilactobacillus sakei subsp. sakei 23K

73.077

97.406

0.712
  recA Streptococcus mitis SK321

67.052

99.712

0.669
  recA Streptococcus pneumoniae D39

66.571

100

0.666
  recA Streptococcus pneumoniae Rx1

66.571

100

0.666
  recA Streptococcus pneumoniae R6

66.571

100

0.666
  recA Streptococcus pneumoniae TIGR4

66.571

100

0.666
  recA Streptococcus mitis NCTC 12261

67.151

99.135

0.666
  recA Streptococcus mutans UA159

65.527

100

0.663
  recA Streptococcus pyogenes NZ131

67.683

94.524

0.64
  recA Neisseria gonorrhoeae strain FA1090

63.93

98.271

0.628
  recA Lactococcus lactis subsp. cremoris KW2

66.061

95.101

0.628
  recA Neisseria gonorrhoeae MS11

63.93

98.271

0.628
  recA Neisseria gonorrhoeae MS11

63.93

98.271

0.628
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.404

98.559

0.605
  recA Ralstonia pseudosolanacearum GMI1000

66.038

91.643

0.605
  recA Acinetobacter baumannii D1279779

60.933

98.847

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

94.236

0.599
  recA Helicobacter pylori strain NCTC11637

64

93.66

0.599
  recA Helicobacter pylori 26695

64

93.66

0.599
  recA Vibrio cholerae strain A1552

64.486

92.507

0.597
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.486

92.507

0.597
  recA Acinetobacter baylyi ADP1

60.526

98.559

0.597
  recA Pseudomonas stutzeri DSM 10701

60.355

97.406

0.588
  recA Glaesserella parasuis strain SC1401

63.323

91.931

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.372

93.084

0.562