Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   RBH91_RS09985 Genome accession   NZ_CP133085
Coordinates   2008224..2009474 (+) Length   416 a.a.
NCBI ID   WP_307894428.1    Uniprot ID   -
Organism   Bacillus swezeyi strain EA208     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2003224..2014474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH91_RS09960 ymfI 2004517..2005248 (+) 732 WP_307894425.1 elongation factor P 5-aminopentanone reductase -
  RBH91_RS09965 - 2005319..2005576 (+) 258 WP_076760582.1 DUF3243 domain-containing protein -
  RBH91_RS09970 - 2005845..2006636 (+) 792 WP_076760583.1 YmfK family protein -
  RBH91_RS09975 - 2006654..2007559 (+) 906 WP_307894426.1 RodZ domain-containing protein -
  RBH91_RS09980 pgsA 2007621..2008202 (+) 582 WP_307894427.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RBH91_RS09985 cinA 2008224..2009474 (+) 1251 WP_307894428.1 competence/damage-inducible protein A Machinery gene
  RBH91_RS09990 recA 2009645..2010688 (+) 1044 WP_076760587.1 recombinase RecA Machinery gene
  RBH91_RS09995 rny 2011048..2012607 (+) 1560 WP_076760588.1 ribonuclease Y -
  RBH91_RS10000 - 2012694..2013491 (+) 798 WP_307894429.1 TIGR00282 family metallophosphoesterase -
  RBH91_RS10005 spoVS 2013693..2013953 (+) 261 WP_003181955.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45577.88 Da        Isoelectric Point: 5.1621

>NTDB_id=871736 RBH91_RS09985 WP_307894428.1 2008224..2009474(+) (cinA) [Bacillus swezeyi strain EA208]
MKLERKAEIIAVGSELLLGQIANTNAQFISKQLAEIGMNVFYHTAVGDNPERLKQVIQTAQKRSDFIIFSGGLGPTKDDL
TKETIAEVVGRPLELDADAFQSIEDYFKKTNRTMSPNNRKQALILEGSDVLPNRFGMAPGMFLEHESRFYMLLPGPPKEL
EPMFENEAKPLILEKLGSKEKIVSRVLRFFGIGESQLETDLEDLIDAQTNPTIAPLAADGEVTLRLTAKHADPDETSRLL
KETEDRILERVGEYFYGYDDTSLVEELAKACTRKGITLSAAESFTGGLFSSWLTEISGASQYFKGGAVCYTNELKVSAAG
VSEDTLNRFGAVSGQCAKELAKGIRDKTGSDIGISFTGVAGPNTQEGHPAGKVLIGISVKGRDEESFEFMFAGSRSGIRK
RSAKYGCHLLLKILEK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=871736 RBH91_RS09985 WP_307894428.1 2008224..2009474(+) (cinA) [Bacillus swezeyi strain EA208]
ATGAAATTGGAAAGAAAAGCGGAAATTATCGCTGTCGGATCAGAGCTGCTGCTCGGACAAATCGCCAATACGAATGCGCA
GTTTATCAGCAAACAATTGGCCGAAATCGGAATGAACGTCTTTTATCATACAGCGGTCGGAGACAACCCCGAACGTCTCA
AACAAGTGATTCAAACCGCACAGAAAAGGTCTGATTTCATCATCTTTTCAGGAGGGCTCGGACCGACGAAAGACGATTTG
ACCAAAGAAACAATCGCCGAGGTTGTCGGGCGTCCCCTTGAGCTTGATGCGGATGCTTTTCAATCGATCGAGGATTATTT
CAAAAAAACAAACCGCACGATGTCGCCGAACAATCGTAAACAGGCGCTGATCCTTGAAGGATCGGATGTCCTGCCAAACC
GGTTCGGCATGGCTCCGGGCATGTTCCTGGAACATGAATCGCGTTTCTATATGCTTCTTCCCGGGCCGCCGAAAGAGCTT
GAACCGATGTTTGAAAATGAAGCGAAGCCGCTGATTCTAGAAAAGCTCGGCTCAAAGGAAAAGATCGTGTCAAGGGTGCT
GCGGTTTTTTGGCATCGGAGAATCCCAGCTTGAAACGGATTTGGAAGACCTTATTGATGCGCAGACGAATCCGACGATCG
CTCCTTTGGCGGCAGATGGGGAAGTCACCCTCAGGCTGACGGCCAAGCACGCTGATCCGGATGAAACAAGCCGTCTGCTG
AAAGAAACGGAAGACCGCATTTTGGAGCGCGTCGGAGAGTACTTTTACGGATATGATGATACATCGCTTGTGGAAGAGCT
TGCGAAGGCATGCACCCGAAAAGGGATCACCCTGTCTGCTGCGGAAAGTTTTACAGGGGGCCTTTTCTCAAGCTGGCTGA
CAGAAATCAGCGGGGCTTCCCAATATTTTAAAGGCGGCGCTGTCTGCTATACGAACGAATTGAAGGTTTCAGCCGCCGGT
GTCTCCGAAGATACGCTGAACCGCTTTGGCGCAGTCAGCGGGCAATGCGCAAAAGAGCTTGCCAAAGGCATCAGAGACAA
AACGGGAAGCGACATCGGCATCAGCTTTACGGGAGTCGCGGGGCCGAATACCCAGGAAGGCCACCCGGCCGGAAAAGTAT
TAATCGGCATCTCTGTAAAGGGCAGAGATGAAGAGTCGTTTGAATTCATGTTCGCCGGATCCAGATCCGGCATCCGGAAG
AGGTCCGCCAAATACGGCTGCCATCTGCTGCTGAAAATACTAGAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Competence-damaged protein (CinA)

(261-413)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

78.846

100

0.788
  cinA Streptococcus mitis SK321

45.585

100

0.459
  cinA Streptococcus mitis NCTC 12261

45.585

100

0.459
  cinA Streptococcus pneumoniae TIGR4

45.346

100

0.457
  cinA Streptococcus pneumoniae Rx1

44.869

100

0.452
  cinA Streptococcus pneumoniae R6

44.869

100

0.452
  cinA Streptococcus pneumoniae D39

44.63

100

0.45
  cinA Streptococcus mutans UA159

44.794

99.279

0.445
  cinA Streptococcus suis isolate S10

41.162

95.192

0.392