Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | LACPH_RS04255 | Genome accession | NZ_CP132482 |
| Coordinates | 876827..877870 (+) | Length | 347 a.a. |
| NCBI ID | WP_087911832.1 | Uniprot ID | A0AAN1EY92 |
| Organism | Lacticaseibacillus parahuelsenbergensis strain NCIMB 15471 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 852699..886339 | 876827..877870 | within | 0 |
Gene organization within MGE regions
Location: 852699..886339
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LACPH_RS04130 (LACPH_000826) | - | 852896..853531 (-) | 636 | WP_274784578.1 | DsbA family protein | - |
| LACPH_RS04135 (LACPH_000827) | - | 853601..854194 (-) | 594 | WP_274784579.1 | CYTH domain-containing protein | - |
| LACPH_RS04140 (LACPH_000828) | - | 854361..855038 (+) | 678 | WP_010489529.1 | GTP pyrophosphokinase family protein | - |
| LACPH_RS04145 (LACPH_000829) | - | 855040..855837 (+) | 798 | WP_010489527.1 | NAD kinase | - |
| LACPH_RS04150 (LACPH_000830) | - | 855837..856739 (+) | 903 | WP_274784580.1 | RluA family pseudouridine synthase | - |
| LACPH_RS04155 (LACPH_000831) | - | 856844..857902 (-) | 1059 | WP_274784588.1 | FAD:protein FMN transferase | - |
| LACPH_RS04160 (LACPH_000832) | - | 858120..858755 (-) | 636 | WP_274784581.1 | copper homeostasis protein CutC | - |
| LACPH_RS04165 (LACPH_000833) | - | 858776..859594 (-) | 819 | WP_025012504.1 | undecaprenyl-diphosphate phosphatase | - |
| LACPH_RS04170 (LACPH_000834) | - | 859652..859786 (+) | 135 | WP_306387267.1 | hypothetical protein | - |
| LACPH_RS04175 (LACPH_000835) | - | 859815..860855 (-) | 1041 | WP_306387268.1 | lactonase family protein | - |
| LACPH_RS04180 (LACPH_000836) | - | 861123..861497 (+) | 375 | WP_274784583.1 | PTS glucitol/sorbitol transporter subunit IIA | - |
| LACPH_RS04185 (LACPH_000837) | rpsN | 861593..861862 (-) | 270 | WP_003564153.1 | 30S ribosomal protein S14 | - |
| LACPH_RS04190 (LACPH_000838) | - | 861979..862956 (-) | 978 | WP_032958395.1 | GMP reductase | - |
| LACPH_RS04195 (LACPH_000839) | - | 863151..864098 (-) | 948 | WP_010489474.1 | magnesium transporter CorA family protein | - |
| LACPH_RS04200 (LACPH_000840) | - | 864165..865007 (+) | 843 | WP_274784584.1 | methyltransferase domain-containing protein | - |
| LACPH_RS04205 (LACPH_000841) | - | 865088..866545 (-) | 1458 | WP_306387269.1 | ISNCY family transposase | - |
| LACPH_RS04210 (LACPH_000842) | trmL | 867000..867509 (+) | 510 | WP_049169083.1 | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | - |
| LACPH_RS04215 (LACPH_000843) | - | 867532..867939 (+) | 408 | WP_087911825.1 | DUF1149 family protein | - |
| LACPH_RS04220 (LACPH_000844) | - | 868044..870356 (+) | 2313 | WP_274784589.1 | DNA translocase FtsK | - |
| LACPH_RS04225 (LACPH_000845) | yfmF | 870365..871627 (+) | 1263 | WP_306387270.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| LACPH_RS04230 (LACPH_000846) | yfmH | 871624..872919 (+) | 1296 | WP_274784591.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| LACPH_RS04235 (LACPH_000847) | ymfI | 872916..873644 (+) | 729 | WP_274784592.1 | elongation factor P 5-aminopentanone reductase | - |
| LACPH_RS04240 (LACPH_000848) | - | 873731..874669 (+) | 939 | WP_049169078.1 | helix-turn-helix domain-containing protein | - |
| LACPH_RS04245 (LACPH_000849) | pgsA | 874666..875259 (+) | 594 | WP_025012513.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| LACPH_RS04250 (LACPH_000850) | cinA | 875531..876772 (+) | 1242 | WP_274784593.1 | competence/damage-inducible protein A | Machinery gene |
| LACPH_RS04255 (LACPH_000851) | recA | 876827..877870 (+) | 1044 | WP_087911832.1 | recombinase RecA | Machinery gene |
| LACPH_RS04260 (LACPH_000852) | rny | 878471..880042 (+) | 1572 | WP_010489446.1 | ribonuclease Y | - |
| LACPH_RS04265 (LACPH_000853) | - | 880188..880841 (-) | 654 | WP_274784594.1 | YigZ family protein | - |
| LACPH_RS04270 (LACPH_000854) | - | 880869..882131 (+) | 1263 | WP_274784595.1 | DEAD/DEAH box helicase | - |
| LACPH_RS04275 (LACPH_000855) | - | 882289..882807 (+) | 519 | WP_274784596.1 | ComF family protein | - |
| LACPH_RS04280 (LACPH_000856) | hpf | 882932..883489 (+) | 558 | WP_010489439.1 | ribosome hibernation-promoting factor, HPF/YfiA family | - |
| LACPH_RS04285 (LACPH_000857) | secA | 883758..886121 (+) | 2364 | WP_039638826.1 | preprotein translocase subunit SecA | - |
Sequence
Protein
Download Length: 347 a.a. Molecular weight: 37451.82 Da Isoelectric Point: 5.3374
>NTDB_id=869186 LACPH_RS04255 WP_087911832.1 876827..877870(+) (recA) [Lacticaseibacillus parahuelsenbergensis strain NCIMB 15471]
MADTERQEALATALKKIEKNFGKGAIMKMGDKADTRVSAISSGSLAIDEVLGVGGLPRGRIVEMYGPESSGKTTVALHAV
AMVQQHGGTAAYIDAENAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDILVIDSVAALVPQAEIDGDMG
DAHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVGIVFGNPEITPGGRALKFYATVRLEIRRSEQIKNGTEIIGN
RTKIKVVKNKVAPPFKVAIVDIMYGRGISQSGELVDMAVEKDIVEKSGSWYAYQGERIGQGREHAKTYLETHEEMRKKIE
GQVREAYGMPLNQVIEMEDPDESARAS
MADTERQEALATALKKIEKNFGKGAIMKMGDKADTRVSAISSGSLAIDEVLGVGGLPRGRIVEMYGPESSGKTTVALHAV
AMVQQHGGTAAYIDAENAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDILVIDSVAALVPQAEIDGDMG
DAHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVGIVFGNPEITPGGRALKFYATVRLEIRRSEQIKNGTEIIGN
RTKIKVVKNKVAPPFKVAIVDIMYGRGISQSGELVDMAVEKDIVEKSGSWYAYQGERIGQGREHAKTYLETHEEMRKKIE
GQVREAYGMPLNQVIEMEDPDESARAS
Nucleotide
Download Length: 1044 bp
>NTDB_id=869186 LACPH_RS04255 WP_087911832.1 876827..877870(+) (recA) [Lacticaseibacillus parahuelsenbergensis strain NCIMB 15471]
GTGGCAGACACAGAACGACAAGAAGCGTTAGCAACAGCACTAAAAAAGATTGAAAAGAATTTTGGCAAAGGTGCCATCAT
GAAAATGGGGGACAAGGCTGATACGCGGGTTTCGGCCATTTCCAGTGGCTCACTTGCGATTGACGAAGTGCTTGGCGTTG
GTGGGTTGCCACGCGGGCGGATTGTTGAGATGTACGGTCCTGAAAGCTCCGGGAAAACCACCGTTGCCTTGCATGCGGTG
GCAATGGTGCAGCAGCATGGCGGAACCGCCGCGTATATTGATGCGGAAAATGCCATGGATCCTAAGTATGCGACCGCGCT
GGGCGTCAATATTGATGAACTGTTGCTCTCTCAACCGGATACTGGAGAACAAGGGCTGGAAATTGCTGACGAGCTGGTGG
CCTCTGGAGCAATTGATATTCTGGTGATTGATTCGGTGGCCGCGCTGGTTCCGCAAGCCGAGATTGACGGCGATATGGGC
GATGCGCACGTTGGCCTACAGGCGCGACTGATGTCACAAGCGCTGCGGAAGCTGTCTGGCAACATCAGTAAGACGAAAAC
TATTGCCGTCTTTATTAACCAAATTCGTGAGAAAGTCGGCATCGTTTTTGGCAACCCAGAAATAACCCCGGGTGGTCGGG
CATTAAAGTTTTATGCAACAGTGCGGCTGGAAATCCGCCGTTCCGAACAGATTAAAAACGGTACTGAGATTATCGGTAAT
CGCACTAAAATCAAGGTCGTTAAAAATAAAGTGGCGCCGCCTTTTAAAGTGGCGATTGTGGACATTATGTATGGCCGTGG
CATTTCGCAAAGCGGTGAACTCGTCGATATGGCGGTTGAAAAAGACATCGTTGAAAAGTCCGGGTCGTGGTATGCCTACC
AAGGTGAGCGAATCGGCCAAGGACGCGAGCATGCCAAGACTTATCTTGAAACTCATGAGGAAATGCGTAAAAAGATTGAG
GGGCAAGTGCGTGAGGCATACGGGATGCCGTTAAATCAGGTGATTGAAATGGAAGATCCGGATGAATCGGCGCGAGCTTC
ATGA
GTGGCAGACACAGAACGACAAGAAGCGTTAGCAACAGCACTAAAAAAGATTGAAAAGAATTTTGGCAAAGGTGCCATCAT
GAAAATGGGGGACAAGGCTGATACGCGGGTTTCGGCCATTTCCAGTGGCTCACTTGCGATTGACGAAGTGCTTGGCGTTG
GTGGGTTGCCACGCGGGCGGATTGTTGAGATGTACGGTCCTGAAAGCTCCGGGAAAACCACCGTTGCCTTGCATGCGGTG
GCAATGGTGCAGCAGCATGGCGGAACCGCCGCGTATATTGATGCGGAAAATGCCATGGATCCTAAGTATGCGACCGCGCT
GGGCGTCAATATTGATGAACTGTTGCTCTCTCAACCGGATACTGGAGAACAAGGGCTGGAAATTGCTGACGAGCTGGTGG
CCTCTGGAGCAATTGATATTCTGGTGATTGATTCGGTGGCCGCGCTGGTTCCGCAAGCCGAGATTGACGGCGATATGGGC
GATGCGCACGTTGGCCTACAGGCGCGACTGATGTCACAAGCGCTGCGGAAGCTGTCTGGCAACATCAGTAAGACGAAAAC
TATTGCCGTCTTTATTAACCAAATTCGTGAGAAAGTCGGCATCGTTTTTGGCAACCCAGAAATAACCCCGGGTGGTCGGG
CATTAAAGTTTTATGCAACAGTGCGGCTGGAAATCCGCCGTTCCGAACAGATTAAAAACGGTACTGAGATTATCGGTAAT
CGCACTAAAATCAAGGTCGTTAAAAATAAAGTGGCGCCGCCTTTTAAAGTGGCGATTGTGGACATTATGTATGGCCGTGG
CATTTCGCAAAGCGGTGAACTCGTCGATATGGCGGTTGAAAAAGACATCGTTGAAAAGTCCGGGTCGTGGTATGCCTACC
AAGGTGAGCGAATCGGCCAAGGACGCGAGCATGCCAAGACTTATCTTGAAACTCATGAGGAAATGCGTAAAAAGATTGAG
GGGCAAGTGCGTGAGGCATACGGGATGCCGTTAAATCAGGTGATTGAAATGGAAGATCCGGATGAATCGGCGCGAGCTTC
ATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.