Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QYY55_RS05050 Genome accession   NZ_CP130331
Coordinates   1066096..1067157 (+) Length   353 a.a.
NCBI ID   WP_258267998.1    Uniprot ID   -
Organism   Lysinibacillus fusiformis strain MGMM7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1061096..1072157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYY55_RS05025 (QYY55_05020) - 1061815..1062072 (+) 258 WP_008178933.1 DUF3243 domain-containing protein -
  QYY55_RS05030 (QYY55_05025) - 1062300..1063085 (+) 786 WP_069483265.1 DUF3388 domain-containing protein -
  QYY55_RS05035 (QYY55_05030) - 1063102..1064031 (+) 930 WP_175422988.1 RodZ family helix-turn-helix domain-containing protein -
  QYY55_RS05040 (QYY55_05035) pgsA 1064079..1064657 (+) 579 WP_025113992.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QYY55_RS05045 (QYY55_05040) cinA 1064675..1065934 (+) 1260 WP_258267997.1 competence/damage-inducible protein A Machinery gene
  QYY55_RS05050 (QYY55_05045) recA 1066096..1067157 (+) 1062 WP_258267998.1 recombinase RecA Machinery gene
  QYY55_RS05055 (QYY55_05050) rny 1067681..1069240 (+) 1560 WP_008178918.1 ribonuclease Y -
  QYY55_RS05060 (QYY55_05055) - 1069387..1070151 (+) 765 WP_258268677.1 tyrosine-protein phosphatase -
  QYY55_RS05065 (QYY55_05060) - 1070405..1071340 (+) 936 WP_375135359.1 O-antigen ligase family protein -
  QYY55_RS05070 (QYY55_05065) - 1071410..1072126 (+) 717 WP_193831205.1 YveK family protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38051.14 Da        Isoelectric Point: 4.7810

>NTDB_id=857922 QYY55_RS05050 WP_258267998.1 1066096..1067157(+) (recA) [Lysinibacillus fusiformis strain MGMM7]
MSDRKAALEQALKQIEKNFGKGSIMKLGEKTDLQIATSSSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQAKGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGSINKSKTIAIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEAIKQGNDIVGNRT
KIKIVKNKVAPPFRTAEVDIMYGEGISKEGETVDLGVELDIVQKSGSWYAYGDERLGQGRENAKQYLKENSAVLDEISNK
IRSSYGIAANSYTIAAHEEDEMDEELMSLLDEE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=857922 QYY55_RS05050 WP_258267998.1 1066096..1067157(+) (recA) [Lysinibacillus fusiformis strain MGMM7]
ATGAGTGATCGTAAAGCAGCCTTAGAACAGGCTTTAAAACAAATTGAAAAGAATTTTGGTAAAGGTTCAATCATGAAACT
CGGTGAAAAAACCGACTTACAAATTGCGACATCTTCAAGTGGATCACTAGCACTTGACGCGGCATTAGGCGTAGGTGGTT
ATCCACGTGGACGTATTATTGAAGTGTATGGTCCTGAATCATCAGGTAAAACAACAGTTGCTTTACATGCTATTGCTGAA
GTACAAGCAAAAGGTGGACAAGCAGCATTTATCGATGCAGAACATGCATTAGATCCAATCTATGCTCAAAAATTAGGTGT
CAACATTGATGAGTTATTATTATCACAGCCAGATACAGGGGAACAAGCACTTGAAATCGCAGAAGCACTAGTTCGTAGTG
GTGCAATTGATATCATCGTTATTGACTCCGTTGCTGCTTTAGTGCCAAAAGCTGAAATTGAAGGGGATATGGGTGATTCT
CATGTCGGCTTACAAGCCCGCTTAATGTCACAAGCATTACGTAAACTTTCAGGTTCTATTAACAAATCAAAAACGATTGC
TATTTTCATTAACCAAATTCGTGAAAAAATTGGGGTAATGTTCGGAAATCCAGAAACAACACCAGGTGGACGTGCCCTTA
AATTCTACAGCTCTGTACGTTTAGAAGTTCGCCGTGCAGAAGCTATTAAGCAAGGTAATGATATTGTTGGTAACCGTACG
AAAATTAAAATTGTGAAAAATAAAGTAGCGCCGCCTTTCCGTACAGCTGAAGTTGATATTATGTATGGAGAAGGTATTTC
TAAAGAAGGCGAAACAGTTGATTTAGGTGTAGAATTAGACATCGTGCAAAAAAGTGGATCTTGGTATGCATATGGTGATG
AGCGTCTAGGTCAAGGTCGAGAAAATGCAAAGCAATATTTAAAAGAAAACTCTGCTGTTTTGGACGAAATCTCAAACAAA
ATTCGATCTTCTTATGGTATTGCTGCTAATTCTTATACAATTGCTGCACATGAAGAAGACGAGATGGATGAAGAATTAAT
GTCACTTCTTGATGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

85.758

93.484

0.802
  recA Latilactobacillus sakei subsp. sakei 23K

76.38

92.351

0.705
  recA Streptococcus mitis NCTC 12261

64.82

100

0.663
  recA Streptococcus mitis SK321

64.82

100

0.663
  recA Streptococcus pneumoniae D39

66.282

98.3

0.652
  recA Streptococcus pneumoniae Rx1

66.282

98.3

0.652
  recA Streptococcus pneumoniae R6

66.282

98.3

0.652
  recA Streptococcus pneumoniae TIGR4

66.282

98.3

0.652
  recA Streptococcus mutans UA159

65.043

98.867

0.643
  recA Streptococcus pyogenes NZ131

64.756

98.867

0.64
  recA Lactococcus lactis subsp. cremoris KW2

66.467

94.618

0.629
  recA Neisseria gonorrhoeae strain FA1090

63.689

98.3

0.626
  recA Neisseria gonorrhoeae MS11

63.689

98.3

0.626
  recA Neisseria gonorrhoeae MS11

63.689

98.3

0.626
  recA Helicobacter pylori strain NCTC11637

62.108

99.433

0.618
  recA Helicobacter pylori 26695

61.823

99.433

0.615
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.682

97.167

0.609
  recA Acinetobacter baylyi ADP1

61.207

98.584

0.603
  recA Glaesserella parasuis strain SC1401

60.807

98.3

0.598
  recA Ralstonia pseudosolanacearum GMI1000

64.22

92.635

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.497

92.351

0.586
  recA Acinetobacter baumannii D1279779

60.411

96.601

0.584
  recA Pseudomonas stutzeri DSM 10701

59.593

97.45

0.581
  recA Vibrio cholerae strain A1552

63.75

90.652

0.578
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.75

90.652

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.539

91.501

0.572