Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QYY55_RS05045 Genome accession   NZ_CP130331
Coordinates   1064675..1065934 (+) Length   419 a.a.
NCBI ID   WP_258267997.1    Uniprot ID   -
Organism   Lysinibacillus fusiformis strain MGMM7     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1059675..1070934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYY55_RS05015 (QYY55_05010) yfmH 1059744..1061042 (+) 1299 WP_193831202.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  QYY55_RS05020 (QYY55_05015) ymfI 1061042..1061770 (+) 729 WP_258267995.1 elongation factor P 5-aminopentanone reductase -
  QYY55_RS05025 (QYY55_05020) - 1061815..1062072 (+) 258 WP_008178933.1 DUF3243 domain-containing protein -
  QYY55_RS05030 (QYY55_05025) - 1062300..1063085 (+) 786 WP_069483265.1 DUF3388 domain-containing protein -
  QYY55_RS05035 (QYY55_05030) - 1063102..1064031 (+) 930 WP_175422988.1 RodZ family helix-turn-helix domain-containing protein -
  QYY55_RS05040 (QYY55_05035) pgsA 1064079..1064657 (+) 579 WP_025113992.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QYY55_RS05045 (QYY55_05040) cinA 1064675..1065934 (+) 1260 WP_258267997.1 competence/damage-inducible protein A Machinery gene
  QYY55_RS05050 (QYY55_05045) recA 1066096..1067157 (+) 1062 WP_258267998.1 recombinase RecA Machinery gene
  QYY55_RS05055 (QYY55_05050) rny 1067681..1069240 (+) 1560 WP_008178918.1 ribonuclease Y -
  QYY55_RS05060 (QYY55_05055) - 1069387..1070151 (+) 765 WP_258268677.1 tyrosine-protein phosphatase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45395.73 Da        Isoelectric Point: 4.9681

>NTDB_id=857921 QYY55_RS05045 WP_258267997.1 1064675..1065934(+) (cinA) [Lysinibacillus fusiformis strain MGMM7]
MNAEILAVGSELLLGQITNTNARFISNQLSELGINVFYHTVVGDNAKRLEQAIEVAESRADLIIFSGGLGPTKDDLTKET
IARHLGVSLEFDEVALTYIEQFFAKRGRPMTENNRKQALILAGSEILANHHGMAPGMIFKNNNRTYILLPGPPKELEPMF
QFEAKPKLAAMLNDGGIIASHVMRFYGIGEAELEVQVQDILDAQTNPTVAPLASDGEVTLRVTAKAETEQQAQQLIAAKV
AQIQALVGDYQYGVDDDSIVSKTVEMLVDNNLTISAAESLTAGLFQSELAEIPGVGNALLGGVVTYAAEAKVKHLGISQE
LIDTHGVVSGECAAAMASAIRKQFGTNIGIGLTGEAGPTAHDHQPVGTVWIGIAINDEEPLTYLLHLSGMRNTNRLRAVK
FTCHYLMQRLEERGYTKRY

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=857921 QYY55_RS05045 WP_258267997.1 1064675..1065934(+) (cinA) [Lysinibacillus fusiformis strain MGMM7]
ATGAATGCTGAAATTCTTGCGGTTGGCTCAGAGCTATTATTAGGCCAAATTACGAATACGAATGCGAGATTTATCTCGAA
CCAGTTATCCGAGCTAGGCATTAATGTTTTTTACCATACAGTAGTGGGTGATAATGCAAAACGTTTAGAGCAAGCTATTG
AAGTGGCAGAATCTCGTGCAGATTTAATTATATTTTCGGGAGGACTAGGACCTACGAAAGATGATTTAACAAAAGAAACG
ATTGCTCGCCATCTCGGTGTTTCTCTTGAATTTGATGAAGTTGCATTAACTTATATTGAGCAGTTTTTTGCCAAGCGAGG
ACGTCCTATGACGGAGAATAACCGCAAACAGGCTTTAATTCTAGCTGGAAGCGAAATACTAGCCAATCATCACGGAATGG
CGCCTGGTATGATTTTCAAAAACAATAATCGTACGTATATCTTACTCCCAGGGCCACCAAAAGAGCTTGAGCCTATGTTT
CAATTTGAGGCCAAACCTAAGCTTGCTGCGATGCTTAACGATGGAGGGATCATTGCCTCTCATGTGATGCGTTTTTATGG
GATTGGTGAGGCCGAACTTGAAGTCCAGGTACAGGATATTTTAGATGCCCAAACAAATCCAACAGTCGCTCCACTTGCGT
CGGATGGTGAGGTAACATTACGCGTAACAGCCAAAGCAGAAACCGAACAACAAGCCCAACAACTTATTGCCGCCAAAGTA
GCACAGATACAAGCCCTTGTTGGTGACTATCAATATGGTGTGGATGATGACTCGATTGTTTCAAAGACAGTTGAAATGCT
AGTAGACAATAATCTAACTATTTCTGCTGCGGAAAGTTTAACGGCAGGGTTGTTTCAATCAGAGCTTGCGGAAATCCCAG
GGGTAGGTAACGCACTTCTTGGTGGCGTAGTGACCTATGCGGCAGAAGCAAAAGTAAAGCATCTTGGTATTTCACAAGAA
TTAATAGATACACACGGCGTTGTTAGCGGTGAATGTGCTGCTGCAATGGCAAGTGCAATTCGAAAACAATTTGGGACAAA
TATCGGCATTGGATTAACAGGAGAAGCAGGGCCTACAGCACATGATCATCAGCCAGTAGGGACGGTTTGGATTGGTATTG
CCATCAATGATGAGGAGCCACTTACATACTTACTTCATTTATCTGGTATGCGTAATACAAATCGACTCCGTGCAGTGAAA
TTTACATGCCATTATTTAATGCAGCGTTTGGAAGAACGCGGCTATACAAAACGATATTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(258-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.699

98.329

0.508
  cinA Streptococcus mitis SK321

45.17

91.408

0.413
  cinA Streptococcus mitis NCTC 12261

44.386

91.408

0.406
  cinA Streptococcus pneumoniae TIGR4

44.386

91.408

0.406
  cinA Streptococcus pneumoniae Rx1

44.386

91.408

0.406
  cinA Streptococcus pneumoniae R6

44.386

91.408

0.406
  cinA Streptococcus pneumoniae D39

44.125

91.408

0.403
  cinA Streptococcus mutans UA159

44.063

90.453

0.399