Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   Q0F97_RS00190 Genome accession   NZ_CP129878
Coordinates   40968..42011 (+) Length   347 a.a.
NCBI ID   WP_014123434.1    Uniprot ID   A0A2H6DI13
Organism   Tetragenococcus halophilus strain H2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 35968..47011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q0F97_RS00170 (Q0F97_00170) - 36560..37858 (+) 1299 WP_014123430.1 pitrilysin family protein -
  Q0F97_RS00175 (Q0F97_00175) - 37955..38836 (+) 882 WP_014123431.1 RodZ domain-containing protein -
  Q0F97_RS00180 (Q0F97_00180) pgsA 38892..39473 (+) 582 WP_014123432.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  Q0F97_RS00185 (Q0F97_00185) cinA 39613..40854 (+) 1242 WP_014123433.1 competence/damage-inducible protein A Machinery gene
  Q0F97_RS00190 (Q0F97_00190) recA 40968..42011 (+) 1044 WP_014123434.1 recombinase RecA Machinery gene
  Q0F97_RS00195 (Q0F97_00195) rny 42269..43825 (+) 1557 WP_252922515.1 ribonuclease Y -
  Q0F97_RS00200 (Q0F97_00200) treR 43879..44595 (-) 717 WP_252922516.1 trehalose operon repressor -
  Q0F97_RS00205 (Q0F97_00205) pgmB 44659..45309 (-) 651 WP_094244073.1 beta-phosphoglucomutase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37401.59 Da        Isoelectric Point: 4.8454

>NTDB_id=856074 Q0F97_RS00190 WP_014123434.1 40968..42011(+) (recA) [Tetragenococcus halophilus strain H2]
MADDRKAALDTALKKIEKNFGKGAIMKLGEKADQQISTIPSGSLALDVALGVGGYPRGRIVEVYGPESSGKTTVALHAVA
EVQKQGGTAAFIDAENALDPQYAEHLGVNIDELLLSQPDTGEQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGD
THVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGVMFGSPETTPGGRALKFYSTVRLEVRRAEQLKSGTDIIGNR
TKLKVVKNKVAPPFKIAQVDIMYGEGISQVGELLDMAVEKDLIDKSGAWYSYKEERIGQGRENVKKYMKERPEMVAEISA
LVRKAYGIDDSESAEEGQEELPLEENS

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=856074 Q0F97_RS00190 WP_014123434.1 40968..42011(+) (recA) [Tetragenococcus halophilus strain H2]
TTGGCAGATGACCGCAAAGCAGCACTAGATACTGCATTAAAAAAGATTGAGAAAAATTTTGGCAAGGGCGCTATTATGAA
GCTAGGGGAAAAGGCTGATCAACAGATTTCAACTATTCCTAGTGGCTCACTTGCATTAGATGTCGCATTAGGAGTTGGTG
GTTACCCACGTGGCCGTATCGTAGAAGTGTATGGTCCTGAAAGTTCAGGTAAAACGACCGTTGCTCTTCATGCTGTAGCA
GAAGTTCAAAAGCAAGGGGGAACAGCTGCTTTTATTGATGCAGAAAACGCCTTGGACCCACAATATGCAGAACACTTAGG
TGTTAATATTGATGAACTATTACTATCTCAACCGGACACGGGCGAGCAAGGATTAGAAATCGCTGATGCCTTAGTTTCAA
GTGGCGCTGTTGATATTGTGGTAGTCGATTCAGTCGCAGCATTGGTTCCAAGAGCAGAAATCGATGGCGAAATGGGCGAT
ACTCATGTTGGTTTACAAGCACGTTTGATGTCTCAAGCATTACGTAAGCTATCTGGTTCGATCAATAAAACCAAGACAAT
TGCGCTATTTATTAATCAAATCCGCGAAAAAGTTGGTGTTATGTTTGGTAGCCCGGAAACTACGCCAGGTGGACGCGCAT
TAAAATTTTATTCTACAGTGCGTTTAGAAGTTCGACGAGCTGAACAATTAAAATCTGGTACGGATATTATTGGTAACCGC
ACGAAGCTTAAAGTCGTAAAAAATAAAGTTGCTCCCCCATTTAAGATAGCACAGGTAGACATTATGTACGGAGAAGGTAT
TTCACAAGTAGGTGAATTATTGGATATGGCCGTAGAAAAAGATCTTATTGACAAGAGTGGTGCATGGTATTCTTATAAAG
AAGAACGGATTGGCCAAGGACGTGAAAATGTGAAAAAATATATGAAAGAACGTCCAGAAATGGTCGCTGAAATATCAGCG
CTTGTTCGTAAAGCTTATGGGATTGATGATTCTGAGTCAGCAGAAGAAGGACAAGAAGAACTTCCTTTAGAGGAAAATTC
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2H6DI13

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

79.07

99.135

0.784
  recA Bacillus subtilis subsp. subtilis str. 168

77.134

94.524

0.729
  recA Streptococcus mitis SK321

69.795

98.271

0.686
  recA Streptococcus mutans UA159

69.388

98.847

0.686
  recA Streptococcus pneumoniae TIGR4

70.326

97.118

0.683
  recA Streptococcus pneumoniae Rx1

70.326

97.118

0.683
  recA Streptococcus pneumoniae D39

70.326

97.118

0.683
  recA Streptococcus pneumoniae R6

70.326

97.118

0.683
  recA Streptococcus mitis NCTC 12261

69.208

98.271

0.68
  recA Lactococcus lactis subsp. cremoris KW2

69.643

96.83

0.674
  recA Streptococcus pyogenes NZ131

69.789

95.389

0.666
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.438

94.813

0.611
  recA Neisseria gonorrhoeae MS11

63.939

95.101

0.608
  recA Neisseria gonorrhoeae MS11

63.939

95.101

0.608
  recA Neisseria gonorrhoeae strain FA1090

63.939

95.101

0.608
  recA Acinetobacter baylyi ADP1

58.739

100

0.591
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.412

97.983

0.582
  recA Glaesserella parasuis strain SC1401

61.801

92.795

0.573
  recA Ralstonia pseudosolanacearum GMI1000

63.578

90.202

0.573
  recA Acinetobacter baumannii D1279779

60.494

93.372

0.565
  recA Pseudomonas stutzeri DSM 10701

60.681

93.084

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.635

91.643

0.565
  recA Helicobacter pylori 26695

58.896

93.948

0.553
  recA Helicobacter pylori strain NCTC11637

58.896

93.948

0.553
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.259

93.372

0.553
  recA Vibrio cholerae strain A1552

59.259

93.372

0.553