Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   Q0F97_RS00185 Genome accession   NZ_CP129878
Coordinates   39613..40854 (+) Length   413 a.a.
NCBI ID   WP_014123433.1    Uniprot ID   A0A2H6CQY1
Organism   Tetragenococcus halophilus strain H2     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 34613..45854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q0F97_RS00160 (Q0F97_00160) mscL 34630..35094 (-) 465 WP_252922531.1 large conductance mechanosensitive channel protein MscL -
  Q0F97_RS00165 (Q0F97_00165) - 35299..36567 (+) 1269 WP_252922513.1 pitrilysin family protein -
  Q0F97_RS00170 (Q0F97_00170) - 36560..37858 (+) 1299 WP_014123430.1 pitrilysin family protein -
  Q0F97_RS00175 (Q0F97_00175) - 37955..38836 (+) 882 WP_014123431.1 RodZ domain-containing protein -
  Q0F97_RS00180 (Q0F97_00180) pgsA 38892..39473 (+) 582 WP_014123432.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  Q0F97_RS00185 (Q0F97_00185) cinA 39613..40854 (+) 1242 WP_014123433.1 competence/damage-inducible protein A Machinery gene
  Q0F97_RS00190 (Q0F97_00190) recA 40968..42011 (+) 1044 WP_014123434.1 recombinase RecA Machinery gene
  Q0F97_RS00195 (Q0F97_00195) rny 42269..43825 (+) 1557 WP_252922515.1 ribonuclease Y -
  Q0F97_RS00200 (Q0F97_00200) treR 43879..44595 (-) 717 WP_252922516.1 trehalose operon repressor -
  Q0F97_RS00205 (Q0F97_00205) pgmB 44659..45309 (-) 651 WP_094244073.1 beta-phosphoglucomutase -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45585.67 Da        Isoelectric Point: 4.6540

>NTDB_id=856073 Q0F97_RS00185 WP_014123433.1 39613..40854(+) (cinA) [Tetragenococcus halophilus strain H2]
MKAEIIAVGTEILLGQIDNTNTTFLAEELAGLGIEVYYQSVVGDNPKRLEEALELADQRSDLTVLCGGLGPTDDDLTKQV
TAKHVGQELVTDEGGYQNLLVFFEKRERPMTENNRLQALVFKDGESLQNSNGLAVGIFYQTPTGNSYLLLPGPPNELKPM
FFNEAIPLLQNHFQTDEQLISRVLRFYGIGESELVTKLADLIKHQSNPTIASYAKPNEVTLRLTVSTTDKNDGKQKLDQM
EEVILDRVGDYFYGYGENNSLVEVVVELLKKQKKTVSAAESLTAGSFQAMLGSVSGVSEVFPGGFVTYSETTKEQLLNLD
SKMLEKYGTVSKECAEAMAIQAKKLAHSDFALSFTGVAGPDSLEDQKAGTVWIGLATEEGVESYLYHFTRNRNYIRHSAV
MTGLDLLRKKLIK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=856073 Q0F97_RS00185 WP_014123433.1 39613..40854(+) (cinA) [Tetragenococcus halophilus strain H2]
ATGAAAGCAGAAATCATAGCAGTAGGTACAGAAATTTTGTTAGGACAAATTGATAATACGAATACAACTTTTTTAGCGGA
AGAATTAGCTGGATTAGGAATTGAAGTTTATTATCAAAGTGTTGTAGGAGACAATCCTAAACGCCTGGAAGAAGCATTGG
AGCTAGCGGACCAAAGAAGTGATTTAACCGTTTTGTGTGGGGGATTAGGTCCTACAGACGATGACCTAACAAAACAAGTT
ACAGCAAAACATGTAGGACAAGAGTTAGTGACAGATGAAGGGGGTTATCAAAACTTATTAGTATTTTTTGAAAAACGAGA
ACGACCAATGACAGAAAATAATCGCTTACAAGCTTTAGTTTTCAAAGATGGAGAATCTTTACAAAATAGTAATGGTTTGG
CTGTAGGGATTTTTTATCAAACACCGACAGGTAACTCTTATTTGTTATTACCAGGGCCACCTAATGAATTAAAACCGATG
TTTTTTAATGAAGCTATTCCTTTATTACAAAATCATTTTCAAACAGATGAACAGTTAATTTCGCGCGTGTTGCGTTTTTA
TGGCATTGGAGAATCAGAACTTGTTACTAAATTAGCAGACCTAATCAAACATCAAAGCAATCCAACGATTGCATCATATG
CTAAACCTAATGAAGTTACCTTGCGTTTGACTGTTAGCACCACAGATAAAAATGATGGAAAACAAAAACTGGATCAAATG
GAAGAAGTAATATTAGATCGTGTTGGTGATTACTTTTATGGTTATGGAGAAAATAATTCTTTAGTAGAAGTTGTTGTTGA
ACTATTAAAGAAACAGAAAAAAACTGTAAGTGCAGCTGAAAGTTTGACTGCAGGTAGTTTTCAAGCAATGTTAGGTAGTG
TTTCTGGTGTTTCCGAAGTTTTTCCTGGTGGTTTTGTTACTTACTCAGAAACCACCAAGGAACAGTTACTAAATCTTGAT
TCGAAAATGTTAGAAAAATATGGAACGGTTAGTAAAGAATGTGCAGAAGCGATGGCAATACAAGCGAAAAAACTAGCCCA
TAGTGACTTTGCACTTTCTTTTACAGGAGTAGCCGGACCGGATTCACTAGAAGATCAAAAAGCAGGGACAGTTTGGATAG
GTTTAGCAACTGAAGAAGGTGTGGAAAGTTATTTATACCACTTTACTCGTAATCGGAACTATATTCGTCATAGCGCAGTC
ATGACTGGCTTAGATTTATTAAGGAAAAAATTAATAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Competence-damaged protein (CinA)

(259-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2H6CQY1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

52.257

100

0.533
  cinA Streptococcus mitis NCTC 12261

52.257

100

0.533
  cinA Streptococcus pneumoniae TIGR4

51.781

100

0.528
  cinA Streptococcus pneumoniae Rx1

51.544

100

0.525
  cinA Streptococcus pneumoniae R6

51.544

100

0.525
  cinA Streptococcus pneumoniae D39

51.306

100

0.523
  cinA Streptococcus mutans UA159

50.962

100

0.513
  cinA Bacillus subtilis subsp. subtilis str. 168

45.366

99.274

0.45
  cinA Streptococcus suis isolate S10

43.614

100

0.438