Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QYM22_RS11025 Genome accession   NZ_CP129342
Coordinates   2083624..2084670 (+) Length   348 a.a.
NCBI ID   WP_046132861.1    Uniprot ID   A0AAE2EJX7
Organism   Bacillus glycinifermentans strain SRCM12603     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2078624..2089670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM22_RS11000 (QYM22_11000) - 2079312..2079569 (+) 258 WP_046132856.1 DUF3243 domain-containing protein -
  QYM22_RS11005 (QYM22_11005) - 2079811..2080602 (+) 792 WP_046132857.1 YmfK family protein -
  QYM22_RS11010 (QYM22_11010) - 2080620..2081525 (+) 906 WP_046132858.1 RodZ family helix-turn-helix domain-containing protein -
  QYM22_RS11015 (QYM22_11015) pgsA 2081588..2082169 (+) 582 WP_046132859.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QYM22_RS11020 (QYM22_11020) cinA 2082189..2083439 (+) 1251 WP_065894520.1 competence/damage-inducible protein A Machinery gene
  QYM22_RS11025 (QYM22_11025) recA 2083624..2084670 (+) 1047 WP_046132861.1 recombinase RecA Machinery gene
  QYM22_RS11030 (QYM22_11030) rny 2085015..2086574 (+) 1560 WP_046132862.1 ribonuclease Y -
  QYM22_RS11035 (QYM22_11035) - 2086660..2087457 (+) 798 WP_046132914.1 TIGR00282 family metallophosphoesterase -
  QYM22_RS11040 (QYM22_11040) spoVS 2087660..2087920 (+) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  QYM22_RS11045 (QYM22_11045) - 2088024..2088938 (+) 915 WP_046132863.1 dipeptidase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37952.08 Da        Isoelectric Point: 4.7245

>NTDB_id=852485 QYM22_RS11025 WP_046132861.1 2083624..2084670(+) (recA) [Bacillus glycinifermentans strain SRCM12603]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTETRISTVPSGSLALDTALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGAWYSYQDERLGQGRENAKQFLKENKDVLLMIQEQ
IREHYGLDNNGVSAPKEEEEDIQEELEF

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=852485 QYM22_RS11025 WP_046132861.1 2083624..2084670(+) (recA) [Bacillus glycinifermentans strain SRCM12603]
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCGCTTAAACAAATAGAAAAACAGTTTGGAAAAGGTTCCATCATGAAACT
CGGAGAACAAACCGAGACGAGAATTTCAACCGTTCCGAGCGGCTCTTTAGCGCTCGATACAGCCCTCGGGGTGGGCGGAT
ATCCGCGCGGACGGATTATTGAAGTATACGGCCCTGAAAGCTCCGGTAAAACGACGGTGGCGCTTCACGCGATTGCCGAA
GTTCAGCAGCAGGGCGGACAGGCGGCGTTCATAGACGCCGAGCATGCGCTTGATCCCGTTTACGCGCAAAAATTAGGGGT
TAACATTGACGAGCTGCTGCTGTCCCAGCCTGACACGGGGGAGCAGGCACTTGAAATTGCTGAAGCGCTTGTCAGAAGCG
GAGCCGTTGACATCGTCGTCATCGACTCCGTTGCGGCGCTCGTGCCGAAGGCGGAAATCGAAGGAGACATGGGAGACTCG
CATGTCGGGCTGCAGGCCAGACTGATGTCCCAGGCGCTGCGGAAGCTTTCCGGAGCAATCAATAAATCAAAAACGATCGC
GATCTTTATTAACCAGATCCGCGAAAAAGTCGGCGTCATGTTCGGAAACCCTGAGACGACCCCAGGGGGAAGAGCCCTGA
AGTTCTATTCTTCCGTGCGGCTTGAAGTGCGCCGCGCCGAACAGCTCAAACAAGGCAACGACGTCATGGGGAACAAGACG
AAAATTAAAGTCGTGAAAAACAAAGTGGCGCCTCCATTCCGGACGGCCGAAGTAGACATTATGTACGGCGAAGGAATCTC
CAAAGAAGGGGAAATCATCGACCTTGGAACAGAGCTTGACATCGTCCAAAAAAGCGGGGCATGGTACTCCTATCAGGATG
AACGCCTTGGACAGGGCCGCGAAAACGCGAAGCAGTTCCTAAAGGAAAACAAAGATGTGCTTTTGATGATCCAAGAGCAG
ATCAGGGAGCATTACGGCTTGGATAACAACGGTGTTTCGGCTCCAAAAGAAGAAGAGGAAGACATTCAGGAAGAGCTCGA
ATTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

96.988

95.402

0.925
  recA Latilactobacillus sakei subsp. sakei 23K

74.618

93.966

0.701
  recA Streptococcus mitis SK321

67.638

98.563

0.667
  recA Streptococcus mitis NCTC 12261

67.638

98.563

0.667
  recA Streptococcus pneumoniae TIGR4

69.394

94.828

0.658
  recA Streptococcus pneumoniae Rx1

69.394

94.828

0.658
  recA Streptococcus pneumoniae D39

69.394

94.828

0.658
  recA Streptococcus pneumoniae R6

69.394

94.828

0.658
  recA Streptococcus mutans UA159

68.693

94.54

0.649
  recA Streptococcus pyogenes NZ131

68.293

94.253

0.644
  recA Lactococcus lactis subsp. cremoris KW2

67.273

94.828

0.638
  recA Ralstonia pseudosolanacearum GMI1000

65.854

94.253

0.621
  recA Helicobacter pylori 26695

62.573

98.276

0.615
  recA Helicobacter pylori strain NCTC11637

62.573

98.276

0.615
  recA Neisseria gonorrhoeae strain FA1090

65.443

93.966

0.615
  recA Neisseria gonorrhoeae MS11

65.443

93.966

0.615
  recA Neisseria gonorrhoeae MS11

65.443

93.966

0.615
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.242

97.414

0.606
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

93.966

0.598
  recA Acinetobacter baylyi ADP1

60

99.138

0.595
  recA Glaesserella parasuis strain SC1401

60

99.138

0.595
  recA Acinetobacter baumannii D1279779

60.526

98.276

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.863

92.241

0.589
  recA Vibrio cholerae strain A1552

63.863

92.241

0.589
  recA Pseudomonas stutzeri DSM 10701

62.5

91.954

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.991

92.816

0.566