Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QYM22_RS11020 Genome accession   NZ_CP129342
Coordinates   2082189..2083439 (+) Length   416 a.a.
NCBI ID   WP_065894520.1    Uniprot ID   -
Organism   Bacillus glycinifermentans strain SRCM12603     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2077189..2088439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM22_RS10995 (QYM22_10995) - 2078510..2079241 (+) 732 WP_046132855.1 SDR family oxidoreductase -
  QYM22_RS11000 (QYM22_11000) - 2079312..2079569 (+) 258 WP_046132856.1 DUF3243 domain-containing protein -
  QYM22_RS11005 (QYM22_11005) - 2079811..2080602 (+) 792 WP_046132857.1 YmfK family protein -
  QYM22_RS11010 (QYM22_11010) - 2080620..2081525 (+) 906 WP_046132858.1 RodZ family helix-turn-helix domain-containing protein -
  QYM22_RS11015 (QYM22_11015) pgsA 2081588..2082169 (+) 582 WP_046132859.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QYM22_RS11020 (QYM22_11020) cinA 2082189..2083439 (+) 1251 WP_065894520.1 competence/damage-inducible protein A Machinery gene
  QYM22_RS11025 (QYM22_11025) recA 2083624..2084670 (+) 1047 WP_046132861.1 recombinase RecA Machinery gene
  QYM22_RS11030 (QYM22_11030) rny 2085015..2086574 (+) 1560 WP_046132862.1 ribonuclease Y -
  QYM22_RS11035 (QYM22_11035) - 2086660..2087457 (+) 798 WP_046132914.1 TIGR00282 family metallophosphoesterase -
  QYM22_RS11040 (QYM22_11040) spoVS 2087660..2087920 (+) 261 WP_003181955.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45430.74 Da        Isoelectric Point: 5.7271

>NTDB_id=852484 QYM22_RS11020 WP_065894520.1 2082189..2083439(+) (cinA) [Bacillus glycinifermentans strain SRCM12603]
MKLERKAEIIAVGSELLLGQIANTNAQFISKHLAEIGINVFYHTAVGDNPERLKRVIQTAQERSDFIIFSGGLGPTKDDL
TKETISRVIGRPLQLDEEAFQSIEDYFKKTNRTMSPNNRKQALVLEGSDVLPNRFGMAPGMLLQHESRFYMLLPGPPKEL
EPMFENEAKPLILEKLGSKEKIVSRVLRFFGIGESQLETDLEDLIDAQTNPTIAPLAADGEVTLRLTAKHADPAETERLL
KETEDRVLERVGEFFYGYDDTSLVEELAKACVRKGLTLSAAESFTGGLFSSWLTELSGASEYFKGGAVCYTNELKVSAAG
VSEDTLQRYGAVSAQCAKELAAGIRSKTGSDIGISFTGVAGPNTQEGHPAGKVFIGISVGGKPEEAHEFMFAGSRSAVRK
RSAKYGCHLLLHILGK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=852484 QYM22_RS11020 WP_065894520.1 2082189..2083439(+) (cinA) [Bacillus glycinifermentans strain SRCM12603]
ATGAAACTTGAAAGAAAAGCTGAAATCATCGCCGTCGGTTCAGAGCTTTTGCTCGGACAGATCGCCAATACGAACGCTCA
GTTTATCAGCAAGCATTTGGCGGAAATCGGAATCAACGTTTTTTATCATACAGCGGTCGGAGACAACCCTGAACGCTTGA
AACGGGTCATTCAAACCGCGCAGGAAAGGTCTGATTTCATTATCTTCTCAGGGGGTCTTGGGCCGACGAAAGACGATTTG
ACAAAAGAAACGATCTCCCGGGTCATCGGGCGTCCCCTTCAGCTTGATGAGGAAGCATTTCAATCGATTGAAGACTATTT
CAAAAAAACGAACCGGACGATGTCTCCGAACAATCGAAAGCAGGCGCTCGTTCTCGAAGGTTCGGATGTGCTGCCAAACC
GGTTCGGAATGGCTCCGGGGATGCTGCTTCAGCATGAATCGCGTTTTTACATGCTGCTTCCGGGGCCCCCGAAGGAACTT
GAGCCGATGTTTGAAAACGAAGCGAAGCCGCTGATTTTGGAAAAACTCGGTTCAAAGGAGAAGATCGTCTCAAGGGTGCT
GCGCTTCTTCGGAATCGGTGAATCCCAGCTTGAAACGGATTTGGAAGACCTTATCGATGCGCAGACGAACCCGACGATCG
CCCCTTTGGCGGCAGATGGGGAAGTCACCCTCAGGCTGACGGCAAAACACGCCGATCCGGCTGAGACGGAGCGCCTTCTA
AAAGAAACGGAAGACCGCGTTTTAGAGCGCGTCGGCGAGTTCTTTTACGGATACGATGATACATCGCTTGTCGAAGAGCT
TGCGAAAGCCTGCGTCCGCAAAGGACTGACGCTGTCTGCCGCGGAAAGCTTTACAGGAGGGCTTTTTTCCAGCTGGCTGA
CGGAATTGAGCGGGGCCTCCGAATACTTCAAAGGCGGCGCCGTCTGCTACACAAACGAATTGAAAGTGTCAGCGGCCGGC
GTTTCGGAAGACACGCTGCAGCGGTACGGTGCGGTCAGCGCGCAATGCGCAAAGGAGCTTGCAGCGGGTATCAGAAGCAA
AACCGGAAGCGACATCGGCATCAGTTTTACCGGTGTGGCCGGTCCGAATACGCAGGAAGGGCATCCCGCCGGGAAGGTAT
TTATCGGCATCTCGGTCGGCGGCAAACCGGAGGAAGCGCACGAGTTCATGTTCGCGGGCTCAAGATCGGCCGTCAGGAAG
CGTTCTGCCAAATACGGCTGCCATCTGCTCCTGCACATTTTGGGTAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(261-413)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

78.502

99.519

0.781
  cinA Streptococcus pneumoniae TIGR4

45.169

99.519

0.45
  cinA Streptococcus mitis NCTC 12261

45.169

99.519

0.45
  cinA Streptococcus mutans UA159

45.036

99.279

0.447
  cinA Streptococcus pneumoniae Rx1

44.686

99.519

0.445
  cinA Streptococcus pneumoniae R6

44.686

99.519

0.445
  cinA Streptococcus pneumoniae D39

44.444

99.519

0.442
  cinA Streptococcus mitis SK321

47.644

91.827

0.438
  cinA Streptococcus suis isolate S10

40.849

90.625

0.37