Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QWY22_RS12455 Genome accession   NZ_CP129238
Coordinates   2451705..2452763 (-) Length   352 a.a.
NCBI ID   WP_053166457.1    Uniprot ID   A0A7H8QG98
Organism   Planococcus sp. N056     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2446705..2457763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWY22_RS12435 (QWY22_12435) - 2446865..2447293 (-) 429 WP_300981183.1 RicAFT regulatory complex protein RicA family protein -
  QWY22_RS12440 (QWY22_12440) miaB 2447298..2448842 (-) 1545 WP_300981184.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  QWY22_RS12445 (QWY22_12445) - 2448942..2449739 (-) 798 WP_300981185.1 TIGR00282 family metallophosphoesterase -
  QWY22_RS12450 (QWY22_12450) rny 2449807..2451366 (-) 1560 WP_300981186.1 ribonuclease Y -
  QWY22_RS12455 (QWY22_12455) recA 2451705..2452763 (-) 1059 WP_053166457.1 recombinase RecA Machinery gene
  QWY22_RS12460 (QWY22_12460) cinA 2452938..2454191 (-) 1254 WP_300981187.1 competence/damage-inducible protein A Machinery gene
  QWY22_RS12465 (QWY22_12465) pgsA 2454221..2454799 (-) 579 WP_300981188.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QWY22_RS12470 (QWY22_12470) - 2454848..2455720 (-) 873 WP_300981189.1 helix-turn-helix domain-containing protein -
  QWY22_RS12475 (QWY22_12475) - 2455738..2456535 (-) 798 WP_036806583.1 YmfK family protein -
  QWY22_RS12480 (QWY22_12480) - 2456722..2457441 (-) 720 WP_300981190.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38126.36 Da        Isoelectric Point: 4.8988

>NTDB_id=851797 QWY22_RS12455 WP_053166457.1 2451705..2452763(-) (recA) [Planococcus sp. N056]
MSDRKAALDMALKSIEKQFGKGSVMKLGEKSDRNVSSVSSGSLALDTALGIGGYPRGRVIEIYGPESSGKTTVSLHAIAE
VQAIGGTAAFIDAEHALDPMYAKALGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIVVVDSVAALVPKAEIEGEMGDS
HMGLQARLMSQALRKLSGVINTSNTIFIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEALKSGTDIIGNRT
KIKIVKNKVAPPFRTAEVDIMYGKGISREGEIVDIGSELDIIQKSGSWYSYNEERIGQGRENAKQFLLNNPEMRNEISNK
IRESFGMAAANYTIAANKDEPEEFNLLIDDEE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=851797 QWY22_RS12455 WP_053166457.1 2451705..2452763(-) (recA) [Planococcus sp. N056]
TTGAGCGACCGTAAAGCAGCGTTAGACATGGCGTTAAAGAGTATAGAAAAGCAATTTGGTAAAGGTTCGGTCATGAAATT
AGGCGAGAAAAGCGACCGCAACGTATCATCGGTTTCAAGTGGTTCATTGGCACTTGATACGGCACTGGGAATAGGCGGAT
ATCCGCGTGGACGGGTAATCGAAATTTACGGCCCTGAAAGTTCAGGTAAAACAACTGTATCCCTGCACGCAATTGCAGAA
GTACAAGCAATCGGAGGAACAGCAGCATTCATCGATGCGGAGCACGCATTAGATCCGATGTATGCCAAAGCGTTGGGCGT
TAATATTGATGAGTTGCTCCTGTCTCAGCCGGATACAGGCGAACAGGCACTTGAAATTGCGGAAGCTTTGGTACGAAGCG
GCGCTATCGATATCGTAGTTGTCGATTCTGTAGCGGCACTTGTGCCAAAAGCGGAAATTGAAGGCGAAATGGGTGACTCC
CATATGGGTCTGCAAGCCCGTTTGATGTCGCAGGCACTTCGCAAACTTTCAGGCGTCATCAATACATCAAACACCATTTT
TATTTTCATCAACCAAATCCGTGAGAAAATTGGTGTAATGTTCGGGAACCCGGAAACAACTCCTGGCGGCCGGGCATTGA
AATTCTATTCTTCTGTCCGTTTGGAAGTAAGACGTGCAGAAGCATTGAAATCCGGTACGGATATCATCGGTAACAGAACA
AAGATCAAGATTGTGAAAAACAAGGTAGCGCCGCCGTTCCGTACAGCTGAAGTGGATATTATGTACGGAAAAGGGATTTC
CCGTGAAGGTGAAATCGTGGATATCGGTTCAGAACTGGACATCATCCAAAAGAGCGGTTCTTGGTATTCTTACAACGAAG
AACGCATTGGACAAGGACGCGAAAACGCGAAGCAGTTCCTTCTTAACAATCCGGAAATGCGCAATGAAATTTCCAACAAA
ATCCGCGAATCTTTTGGCATGGCAGCAGCCAACTACACGATTGCAGCCAATAAAGACGAGCCGGAAGAATTTAACTTGCT
TATTGACGACGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8QG98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

82.875

92.898

0.77
  recA Latilactobacillus sakei subsp. sakei 23K

71.92

99.148

0.713
  recA Streptococcus pneumoniae Rx1

63.288

100

0.656
  recA Streptococcus pneumoniae D39

63.288

100

0.656
  recA Streptococcus pneumoniae TIGR4

63.288

100

0.656
  recA Streptococcus pneumoniae R6

63.288

100

0.656
  recA Streptococcus mitis SK321

63.989

100

0.656
  recA Streptococcus mitis NCTC 12261

63.989

100

0.656
  recA Streptococcus mutans UA159

68.06

95.17

0.648
  recA Streptococcus pyogenes NZ131

69.512

93.182

0.648
  recA Acinetobacter baylyi ADP1

63.218

98.864

0.625
  recA Lactococcus lactis subsp. cremoris KW2

65.758

93.75

0.616
  recA Helicobacter pylori strain NCTC11637

62.573

97.159

0.608
  recA Helicobacter pylori 26695

62.573

97.159

0.608
  recA Neisseria gonorrhoeae MS11

65.741

92.045

0.605
  recA Neisseria gonorrhoeae MS11

65.741

92.045

0.605
  recA Neisseria gonorrhoeae strain FA1090

65.741

92.045

0.605
  recA Acinetobacter baumannii D1279779

61.383

98.58

0.605
  recA Ralstonia pseudosolanacearum GMI1000

67.732

88.92

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.03

93.75

0.591
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.497

92.614

0.588
  recA Pseudomonas stutzeri DSM 10701

62.614

93.466

0.585
  recA Glaesserella parasuis strain SC1401

63.975

91.477

0.585
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.174

91.193

0.585
  recA Vibrio cholerae strain A1552

64.174

91.193

0.585
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.5

90.909

0.568