Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   V6S38_RS19605 Genome accession   NZ_CP145662
Coordinates   3951118..3951795 (+) Length   225 a.a.
NCBI ID   WP_000178155.1    Uniprot ID   -
Organism   Escherichia coli strain S1-INA-02-B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3946118..3956795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6S38_RS19570 (V6S38_19570) gspG 3946598..3947035 (+) 438 WP_001202874.1 type II secretion system major pseudopilin GspG -
  V6S38_RS19575 (V6S38_19575) gspH 3947043..3947552 (+) 510 WP_001076044.1 type II secretion system minor pseudopilin GspH -
  V6S38_RS19580 (V6S38_19580) gspI 3947549..3947926 (+) 378 WP_001041743.1 type II secretion system minor pseudopilin GspI -
  V6S38_RS19585 (V6S38_19585) gspJ 3947919..3948506 (+) 588 WP_000610636.1 type II secretion system minor pseudopilin GspJ -
  V6S38_RS19590 (V6S38_19590) gspK 3948499..3949482 (+) 984 WP_001058522.1 type II secretion system minor pseudopilin GspK -
  V6S38_RS19595 (V6S38_19595) gspL 3949497..3950660 (+) 1164 WP_001115235.1 type II secretion system protein GspL -
  V6S38_RS19600 (V6S38_19600) gspM 3950657..3951118 (+) 462 WP_001295161.1 type II secretion system protein GspM -
  V6S38_RS19605 (V6S38_19605) pilD 3951118..3951795 (+) 678 WP_000178155.1 prepilin peptidase GspO Machinery gene
  V6S38_RS19610 (V6S38_19610) bfr 3951824..3952300 (-) 477 WP_000675504.1 bacterioferritin -
  V6S38_RS19615 (V6S38_19615) bfd 3952372..3952566 (-) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  V6S38_RS19620 (V6S38_19620) chiA 3952735..3955428 (-) 2694 WP_024250449.1 bifunctional chitinase/lysozyme -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24879.74 Da        Isoelectric Point: 7.6578

>NTDB_id=851797 V6S38_RS19605 WP_000178155.1 3951118..3951795(+) (pilD) [Escherichia coli strain S1-INA-02-B]
MTMLLPLFILVGFIAGYFVNAIAYHLSPLEDKTALTFHQVLVHFRQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGAL
FLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=851797 V6S38_RS19605 WP_000178155.1 3951118..3951795(+) (pilD) [Escherichia coli strain S1-INA-02-B]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGGTTATTTTGTTAATGCCATCGCCTATCACCTCTC
GCCGTTGGAGGATAAAACGGCGTTAACGTTTCACCAGGTATTGGTTCATTTCAGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCCCTGATACTTTGTGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATCGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGTACTCACGCTCAGTGTTATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTATGGATTAATTGATTTACATGATGCGGTTTACGGCGCGGTAGCGG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCATGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGGTATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

32.946

100

0.378