Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QWY22_RS12460 Genome accession   NZ_CP129238
Coordinates   2452938..2454191 (-) Length   417 a.a.
NCBI ID   WP_300981187.1    Uniprot ID   -
Organism   Planococcus sp. N056     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2447938..2459191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWY22_RS12445 (QWY22_12445) - 2448942..2449739 (-) 798 WP_300981185.1 TIGR00282 family metallophosphoesterase -
  QWY22_RS12450 (QWY22_12450) rny 2449807..2451366 (-) 1560 WP_300981186.1 ribonuclease Y -
  QWY22_RS12455 (QWY22_12455) recA 2451705..2452763 (-) 1059 WP_053166457.1 recombinase RecA Machinery gene
  QWY22_RS12460 (QWY22_12460) cinA 2452938..2454191 (-) 1254 WP_300981187.1 competence/damage-inducible protein A Machinery gene
  QWY22_RS12465 (QWY22_12465) pgsA 2454221..2454799 (-) 579 WP_300981188.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QWY22_RS12470 (QWY22_12470) - 2454848..2455720 (-) 873 WP_300981189.1 helix-turn-helix domain-containing protein -
  QWY22_RS12475 (QWY22_12475) - 2455738..2456535 (-) 798 WP_036806583.1 YmfK family protein -
  QWY22_RS12480 (QWY22_12480) - 2456722..2457441 (-) 720 WP_300981190.1 SDR family oxidoreductase -
  QWY22_RS12485 (QWY22_12485) - 2457438..2458739 (-) 1302 WP_300981191.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45322.63 Da        Isoelectric Point: 4.5876

>NTDB_id=851798 QWY22_RS12460 WP_300981187.1 2452938..2454191(-) (cinA) [Planococcus sp. N056]
MNAEIIAVGSELLLGQITNSNARFLSSHLAELGINVYYHTVVGDNAGRLEDVIQIAEERADLIIFTGGLGPTKDDLTKET
IARHLGTTLEMNEEALESIVAFFERAGRIMTENNKKQALVLKDSDVLVNNHGMAPGMLYPKDGRVYILLPGPPKEMEPMF
QFEAKPKLARLLNQADVILSHVLRFYGIGEAELEDRLQDLLDRQTNPTIAPLASDGEVMLRLTAKTNSEEQAWELINEAK
TEILERVGQYLYGYDNDSLASKTIELLKEQSKTISAAESLTAGLFQSELAAVAGASAVLTGGVIAYNEEMKIEQLGIAPE
LLKESGVVSEETAIAMAEAVRRKFDTDIAVGLTGAAGPDAHGDQPAGTVWIGIATADGTNAYRLQLSGMRNTNRLRAVKL
ALSYIIRTLTEGNARKI

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=851798 QWY22_RS12460 WP_300981187.1 2452938..2454191(-) (cinA) [Planococcus sp. N056]
ATGAATGCAGAAATTATTGCAGTAGGCTCTGAACTGCTGCTCGGGCAAATCACCAACTCAAATGCCCGTTTTTTATCCAG
CCATCTTGCTGAACTGGGCATCAATGTGTATTACCATACAGTGGTTGGAGACAACGCCGGACGTCTGGAAGACGTGATCC
AAATCGCAGAAGAACGCGCCGATTTGATCATCTTTACAGGCGGACTTGGCCCGACCAAAGACGATTTGACAAAGGAAACG
ATTGCCCGCCATTTGGGTACAACTCTCGAAATGAATGAGGAAGCGCTTGAGTCGATTGTGGCGTTTTTTGAACGTGCCGG
CCGCATCATGACTGAGAACAACAAAAAACAGGCACTTGTTTTAAAGGATAGTGATGTGCTTGTAAATAACCATGGCATGG
CTCCGGGAATGCTGTATCCAAAAGATGGACGTGTTTATATCTTGCTTCCAGGGCCGCCAAAAGAAATGGAGCCGATGTTC
CAGTTTGAGGCAAAACCGAAACTGGCGCGCCTTTTAAATCAGGCGGATGTTATTTTGTCTCATGTGCTGCGGTTTTATGG
CATTGGAGAGGCGGAGCTTGAAGACCGTCTGCAGGACCTTTTGGACCGGCAAACCAATCCGACCATTGCGCCGCTAGCTT
CAGACGGAGAAGTCATGCTCCGGCTTACAGCGAAAACAAACTCGGAAGAGCAGGCATGGGAATTGATCAACGAGGCAAAA
ACGGAAATCCTGGAGCGGGTTGGACAGTACTTGTACGGCTACGACAATGATTCCCTGGCTTCGAAGACAATTGAACTCCT
GAAAGAACAGTCCAAGACCATTTCCGCTGCCGAAAGCCTGACAGCCGGCCTTTTCCAATCGGAACTGGCTGCAGTAGCGG
GCGCCAGTGCGGTTCTTACGGGCGGCGTGATTGCTTACAATGAAGAAATGAAAATCGAACAGTTGGGGATAGCGCCTGAA
CTGCTGAAAGAATCCGGCGTTGTCAGCGAAGAAACCGCTATTGCGATGGCAGAAGCGGTGCGCCGGAAGTTTGATACGGA
TATTGCGGTTGGCTTGACCGGAGCTGCAGGACCGGATGCGCACGGCGACCAGCCGGCGGGGACGGTGTGGATCGGCATTG
CGACAGCAGACGGCACCAATGCTTACCGTCTTCAATTATCGGGGATGCGCAACACCAATCGCTTGCGAGCGGTAAAATTA
GCTTTATCTTATATCATACGAACACTGACAGAAGGAAATGCACGCAAAATTTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(257-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

52.195

98.321

0.513
  cinA Streptococcus mutans UA159

46.377

99.281

0.46
  cinA Streptococcus mitis SK321

45.823

100

0.46
  cinA Streptococcus mitis NCTC 12261

45.585

100

0.458
  cinA Streptococcus pneumoniae TIGR4

44.869

100

0.451
  cinA Streptococcus pneumoniae Rx1

44.63

100

0.448
  cinA Streptococcus pneumoniae R6

44.63

100

0.448
  cinA Streptococcus pneumoniae D39

44.391

100

0.446
  cinA Streptococcus suis isolate S10

40.306

94.005

0.379