Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QWY21_RS12490 Genome accession   NZ_CP129236
Coordinates   2487386..2488441 (-) Length   351 a.a.
NCBI ID   WP_300985152.1    Uniprot ID   -
Organism   Planococcus sp. N022     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2482386..2493441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWY21_RS12470 (QWY21_12470) - 2482642..2483070 (-) 429 WP_300985148.1 RicAFT regulatory complex protein RicA family protein -
  QWY21_RS12475 (QWY21_12475) miaB 2483075..2484613 (-) 1539 WP_300985149.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  QWY21_RS12480 (QWY21_12480) - 2484714..2485511 (-) 798 WP_300985150.1 TIGR00282 family metallophosphoesterase -
  QWY21_RS12485 (QWY21_12485) rny 2485577..2487136 (-) 1560 WP_300985151.1 ribonuclease Y -
  QWY21_RS12490 (QWY21_12490) recA 2487386..2488441 (-) 1056 WP_300985152.1 recombinase RecA Machinery gene
  QWY21_RS12495 (QWY21_12495) cinA 2488616..2489869 (-) 1254 WP_300985153.1 competence/damage-inducible protein A Machinery gene
  QWY21_RS12500 (QWY21_12500) pgsA 2490187..2490765 (-) 579 WP_300985154.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QWY21_RS12505 (QWY21_12505) - 2490818..2491696 (-) 879 WP_300985155.1 RodZ family helix-turn-helix domain-containing protein -
  QWY21_RS12510 (QWY21_12510) - 2491714..2492511 (-) 798 WP_300985156.1 DUF3388 domain-containing protein -
  QWY21_RS12515 (QWY21_12515) - 2492624..2493343 (-) 720 WP_300985157.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37769.99 Da        Isoelectric Point: 4.9890

>NTDB_id=851755 QWY21_RS12490 WP_300985152.1 2487386..2488441(-) (recA) [Planococcus sp. N022]
MSDRKAALEMALKGIEKQFGKGSVMKLGEKSDRNVSSVSSGSLALDSALGIGGYPRGRIIEVYGPESSGKTTVSLHAIAE
VQAAGGTAAFIDAEHALDPLYAKALGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGEMGDS
HMGLQARLMSQALRKLSGVVNKSNTILIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEALKSGSDIIGNRT
KIKVVKNKVAPPFRTAEVDIMYGKGISREGEIVDIGSELEIIQKSGSWYSYNEERIGQGRENVKQFLLANPEIRNDIASK
IRESYGMAAASYAIAAREEEPEDFNLLIDDE

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=851755 QWY21_RS12490 WP_300985152.1 2487386..2488441(-) (recA) [Planococcus sp. N022]
TTGAGCGATCGTAAAGCAGCGTTAGAGATGGCGTTAAAAGGTATAGAAAAACAATTCGGTAAAGGTTCTGTCATGAAATT
GGGAGAGAAAAGCGACCGAAATGTATCATCAGTTTCAAGTGGTTCATTGGCACTTGATTCGGCACTTGGAATAGGCGGAT
ATCCGCGCGGACGTATTATTGAAGTGTACGGACCTGAAAGTTCAGGTAAAACAACTGTTTCTCTTCATGCTATTGCAGAA
GTTCAGGCTGCCGGCGGTACAGCTGCGTTTATCGACGCAGAACACGCCCTAGATCCGCTTTATGCAAAAGCTCTTGGCGT
AAATATTGATGAATTGCTTTTGTCTCAGCCAGATACTGGGGAACAAGCATTAGAAATTGCTGAAGCTCTTGTGCGAAGCG
GCGCAGTTGACATTGTTGTTGTCGACTCAGTTGCAGCACTAGTGCCAAAAGCTGAAATCGAGGGGGAAATGGGCGATTCA
CACATGGGCTTGCAAGCGCGTTTAATGTCCCAAGCCCTTCGTAAATTGTCCGGAGTCGTCAACAAATCGAATACCATTCT
AATCTTTATCAACCAGATCCGTGAGAAAATCGGCGTTATGTTCGGTAACCCTGAAACTACACCAGGCGGACGTGCATTGA
AATTCTATTCTTCTGTTCGTTTGGAAGTCCGTCGTGCCGAAGCTTTGAAATCCGGCTCTGACATTATTGGTAACCGCACG
AAGATCAAAGTAGTGAAAAACAAAGTTGCACCGCCATTCCGTACTGCAGAAGTAGATATTATGTATGGAAAAGGGATTTC
CCGTGAAGGTGAAATTGTTGATATTGGATCAGAATTGGAAATCATCCAAAAGAGCGGTTCTTGGTATTCTTATAACGAAG
AACGTATTGGCCAAGGCCGTGAAAATGTAAAGCAGTTCTTGCTTGCTAATCCGGAAATTCGCAATGACATCGCCAGCAAA
ATCCGTGAATCTTACGGAATGGCAGCTGCTTCCTACGCAATTGCTGCCCGTGAGGAAGAACCGGAAGACTTTAATCTATT
GATTGACGACGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.486

93.162

0.778
  recA Latilactobacillus sakei subsp. sakei 23K

71.552

99.145

0.709
  recA Streptococcus pyogenes NZ131

65.352

100

0.661
  recA Streptococcus mutans UA159

69.909

93.732

0.655
  recA Streptococcus mitis SK321

65.015

97.721

0.635
  recA Streptococcus mitis NCTC 12261

67.273

94.017

0.632
  recA Acinetobacter baylyi ADP1

63.793

99.145

0.632
  recA Streptococcus pneumoniae D39

66.97

94.017

0.63
  recA Streptococcus pneumoniae Rx1

66.97

94.017

0.63
  recA Streptococcus pneumoniae R6

66.97

94.017

0.63
  recA Streptococcus pneumoniae TIGR4

66.97

94.017

0.63
  recA Lactococcus lactis subsp. cremoris KW2

66.061

94.017

0.621
  recA Ralstonia pseudosolanacearum GMI1000

65.046

93.732

0.61
  recA Acinetobacter baumannii D1279779

61.628

98.006

0.604
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.72

93.447

0.595
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.11

92.877

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.798

91.453

0.593
  recA Vibrio cholerae strain A1552

64.798

91.453

0.593
  recA Glaesserella parasuis strain SC1401

64.798

91.453

0.593
  recA Helicobacter pylori 26695

63.692

92.593

0.59
  recA Helicobacter pylori strain NCTC11637

63.692

92.593

0.59
  recA Neisseria gonorrhoeae MS11

65.605

89.459

0.587
  recA Neisseria gonorrhoeae MS11

65.605

89.459

0.587
  recA Neisseria gonorrhoeae strain FA1090

65.605

89.459

0.587
  recA Pseudomonas stutzeri DSM 10701

63.75

91.168

0.581
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.187

91.168

0.567