Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QWY21_RS12495 Genome accession   NZ_CP129236
Coordinates   2488616..2489869 (-) Length   417 a.a.
NCBI ID   WP_300985153.1    Uniprot ID   -
Organism   Planococcus sp. N022     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2483616..2494869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWY21_RS12480 (QWY21_12480) - 2484714..2485511 (-) 798 WP_300985150.1 TIGR00282 family metallophosphoesterase -
  QWY21_RS12485 (QWY21_12485) rny 2485577..2487136 (-) 1560 WP_300985151.1 ribonuclease Y -
  QWY21_RS12490 (QWY21_12490) recA 2487386..2488441 (-) 1056 WP_300985152.1 recombinase RecA Machinery gene
  QWY21_RS12495 (QWY21_12495) cinA 2488616..2489869 (-) 1254 WP_300985153.1 competence/damage-inducible protein A Machinery gene
  QWY21_RS12500 (QWY21_12500) pgsA 2490187..2490765 (-) 579 WP_300985154.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QWY21_RS12505 (QWY21_12505) - 2490818..2491696 (-) 879 WP_300985155.1 RodZ family helix-turn-helix domain-containing protein -
  QWY21_RS12510 (QWY21_12510) - 2491714..2492511 (-) 798 WP_300985156.1 DUF3388 domain-containing protein -
  QWY21_RS12515 (QWY21_12515) - 2492624..2493343 (-) 720 WP_300985157.1 SDR family oxidoreductase -
  QWY21_RS12520 (QWY21_12520) - 2493340..2494641 (-) 1302 WP_300985158.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45412.66 Da        Isoelectric Point: 4.8042

>NTDB_id=851756 QWY21_RS12495 WP_300985153.1 2488616..2489869(-) (cinA) [Planococcus sp. N022]
MNAEIIAVGSELLLGQITNSNARFLSNHLAELGINVYYHTVVGDNSERLKNSIEIAENRADLIIFTGGLGPTKDDLTKET
IARHLGTTLAMDEEALESIVAFFERAGRFMTENNKKQALVLKDSEVLINNHGMAPGMLYKTDSHFYMLLPGPPKEMEPMF
QFEGKPKLAKILNKEDVILSHVLRFYGIGEAELEDRLQDILDNQTNPTIAPLASDGEVTLRITAKTNTEKEAWELINGAK
SQILDNVGQYLYGYDDDSLASKAVELLKEQTKTISAAESLTAGLFQSELASVSGASAVLAGGVITYNEDMKIKHLGLAPE
LLKEYGVVSEQAALAMAEAVRQKFNTDISVSLTGAAGPDAHGDQPAGTVWIGIATEEGTTAYRLQLSGMRNTNRLRAVKL
ALSYVIRTLIDGNARKI

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=851756 QWY21_RS12495 WP_300985153.1 2488616..2489869(-) (cinA) [Planococcus sp. N022]
GTGAATGCAGAAATAATAGCGGTTGGATCAGAATTATTATTAGGGCAAATCACGAATTCAAACGCTCGGTTTTTGTCGAA
CCACTTAGCGGAACTCGGCATCAACGTTTACTACCACACTGTTGTTGGCGACAACTCCGAGCGCTTAAAAAACTCAATCG
AAATTGCTGAAAATCGCGCAGACCTGATTATCTTTACCGGAGGGCTCGGGCCGACAAAAGACGATTTGACGAAAGAAACC
ATTGCCCGCCACCTTGGCACCACTCTCGCTATGGATGAGGAAGCACTGGAATCGATCGTGGCGTTCTTTGAACGTGCCGG
CCGCTTTATGACGGAGAACAACAAAAAGCAAGCATTGGTGTTAAAAGACAGTGAAGTACTGATAAACAATCATGGGATGG
CCCCAGGCATGCTGTATAAAACCGATAGCCACTTTTACATGCTGCTTCCTGGGCCGCCAAAAGAAATGGAGCCGATGTTC
CAGTTCGAAGGCAAGCCGAAGCTCGCCAAAATTCTAAACAAAGAAGATGTCATATTGTCTCATGTGCTGCGTTTTTACGG
CATTGGTGAAGCGGAACTTGAAGATCGGCTGCAAGACATTTTAGACAATCAAACCAATCCGACCATTGCGCCTCTTGCGT
CCGATGGAGAAGTGACATTGCGGATTACAGCAAAAACGAACACTGAAAAAGAAGCTTGGGAATTGATCAATGGAGCGAAA
AGCCAGATTTTGGACAATGTTGGCCAATACCTGTACGGCTATGACGACGATTCTCTAGCGAGTAAAGCAGTGGAGTTGCT
GAAAGAACAAACCAAAACAATATCAGCCGCTGAAAGCTTAACTGCTGGTTTGTTCCAGTCAGAACTTGCTTCTGTTTCTG
GTGCTAGTGCAGTTTTAGCAGGCGGCGTCATTACTTATAATGAAGACATGAAAATAAAGCACCTCGGCCTGGCACCGGAA
TTATTGAAGGAGTACGGCGTGGTGAGCGAACAGGCGGCTTTGGCTATGGCAGAAGCTGTCCGCCAGAAATTCAATACGGA
TATTAGTGTCAGCTTAACCGGCGCTGCAGGTCCGGATGCTCACGGAGACCAGCCGGCAGGAACGGTGTGGATCGGCATTG
CAACAGAAGAAGGAACTACAGCTTACAGGCTTCAATTGTCCGGCATGCGCAACACCAACCGCTTAAGAGCGGTTAAATTG
GCCTTGTCTTATGTGATACGGACGCTTATCGATGGAAACGCACGCAAAATTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

53.071

97.602

0.518
  cinA Streptococcus mitis SK321

46.667

100

0.47
  cinA Streptococcus mitis NCTC 12261

46.429

100

0.468
  cinA Streptococcus mutans UA159

46.988

99.52

0.468
  cinA Streptococcus pneumoniae TIGR4

45.714

100

0.46
  cinA Streptococcus pneumoniae Rx1

45.476

100

0.458
  cinA Streptococcus pneumoniae R6

45.476

100

0.458
  cinA Streptococcus pneumoniae D39

45.238

100

0.456
  cinA Streptococcus suis isolate S10

39.031

94.005

0.367