Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   QWY16_RS12570 Genome accession   NZ_CP129235
Coordinates   2531171..2532226 (-) Length   351 a.a.
NCBI ID   WP_300989566.1    Uniprot ID   -
Organism   Planococcus sp. N016     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 2526171..2537226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWY16_RS12550 (QWY16_12550) - 2526393..2526821 (-) 429 WP_300989562.1 RicAFT regulatory complex protein RicA family protein -
  QWY16_RS12555 (QWY16_12555) miaB 2526826..2528358 (-) 1533 WP_300989563.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  QWY16_RS12560 (QWY16_12560) - 2528463..2529260 (-) 798 WP_300989564.1 TIGR00282 family metallophosphoesterase -
  QWY16_RS12565 (QWY16_12565) rny 2529328..2530887 (-) 1560 WP_300989565.1 ribonuclease Y -
  QWY16_RS12570 (QWY16_12570) recA 2531171..2532226 (-) 1056 WP_300989566.1 recombinase RecA Machinery gene
  QWY16_RS12575 (QWY16_12575) cinA 2532401..2533654 (-) 1254 WP_300989567.1 competence/damage-inducible protein A Machinery gene
  QWY16_RS12580 (QWY16_12580) pgsA 2533685..2534263 (-) 579 WP_300989568.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QWY16_RS12585 (QWY16_12585) - 2534312..2535202 (-) 891 WP_300989569.1 RodZ domain-containing protein -
  QWY16_RS12590 (QWY16_12590) - 2535220..2536017 (-) 798 WP_300989570.1 DUF3388 domain-containing protein -
  QWY16_RS12595 (QWY16_12595) - 2536223..2536942 (-) 720 WP_300989571.1 SDR family oxidoreductase -

Sequence


Protein


Download         Length: 351 a.a.        Molecular weight: 38117.39 Da        Isoelectric Point: 5.0038

>NTDB_id=851719 QWY16_RS12570 WP_300989566.1 2531171..2532226(-) (recA) [Planococcus sp. N016]
MSDRKAALDMALKSIEKQFGKGSVMKLGEKSDRNVSSVSSGSLALDTALGIGGYPRGRVIEIYGPESSGKTTVSLHAIAE
VQAIGGTAAFIDAEHALDPMYAKALGVNIDELLLSQPDTGEQALEITEALVRSGAVDIVVVDSVAALVPKAEIEGEMGDS
HMGLQARLMSQALRKLSGVINKSNTIVIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEALKSGTDIIGNRT
KIKVVKNKVAPPFRTAEVDIMYGKGISREGEIVDIGSEMEIIQKSGSWYSYNEERIGQGRENAKQFLISNPEIRHEISNK
IRESFGMEAANYTIAAREEEPEEFNLLIDEE

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=851719 QWY16_RS12570 WP_300989566.1 2531171..2532226(-) (recA) [Planococcus sp. N016]
TTGAGCGATCGTAAAGCGGCATTAGACATGGCGTTAAAGAGTATAGAAAAGCAATTCGGTAAAGGTTCGGTCATGAAATT
AGGAGAAAAAAGCGACCGGAATGTATCATCAGTTTCCAGCGGTTCATTGGCGCTAGATACTGCTCTAGGAATAGGCGGAT
ACCCGCGCGGACGGGTTATTGAAATATATGGACCTGAAAGTTCGGGTAAAACGACTGTTTCGCTTCACGCCATTGCGGAA
GTGCAGGCTATAGGCGGAACAGCAGCATTTATCGATGCTGAGCACGCATTAGATCCGATGTACGCTAAAGCACTAGGTGT
TAATATTGATGAGTTGCTCCTGTCTCAGCCGGATACAGGCGAGCAGGCACTTGAAATTACAGAAGCTTTAGTTCGAAGCG
GCGCTGTTGATATTGTTGTAGTTGACTCAGTAGCAGCATTAGTGCCAAAAGCGGAAATTGAAGGCGAAATGGGCGACTCG
CATATGGGTCTGCAAGCACGCTTAATGTCTCAGGCGCTTCGTAAACTATCAGGCGTCATCAATAAATCGAACACAATTGT
GATTTTTATTAACCAAATCCGTGAAAAAATCGGCGTTATGTTCGGTAACCCGGAAACGACTCCAGGCGGCCGTGCATTGA
AATTCTATTCGTCTGTCCGTTTGGAAGTAAGACGCGCTGAAGCATTGAAATCCGGCACGGATATCATCGGGAACAGAACG
AAGATCAAAGTCGTCAAAAACAAAGTGGCTCCGCCGTTCCGTACAGCTGAAGTGGATATTATGTACGGAAAAGGGATTTC
CCGTGAAGGTGAAATCGTTGATATCGGTTCAGAGATGGAGATTATCCAGAAAAGCGGTTCTTGGTATTCGTATAATGAGG
AACGTATTGGACAAGGCCGTGAAAACGCCAAACAATTCCTGATTAGCAATCCAGAAATACGCCATGAAATTTCAAACAAA
ATCCGGGAATCATTTGGCATGGAAGCAGCAAACTATACGATTGCTGCACGTGAAGAAGAACCGGAAGAGTTTAATTTACT
GATTGATGAGGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

82.927

93.447

0.775

  recA Latilactobacillus sakei subsp. sakei 23K

72.126

99.145

0.715

  recA Streptococcus pyogenes NZ131

65.819

100

0.664

  recA Streptococcus mutans UA159

70

94.017

0.658

  recA Streptococcus pneumoniae Rx1

64.571

99.715

0.644

  recA Streptococcus pneumoniae D39

64.571

99.715

0.644

  recA Streptococcus pneumoniae R6

64.571

99.715

0.644

  recA Streptococcus pneumoniae TIGR4

64.571

99.715

0.644

  recA Streptococcus mitis NCTC 12261

67.879

94.017

0.638

  recA Streptococcus mitis SK321

67.576

94.017

0.635

  recA Acinetobacter baylyi ADP1

63.793

99.145

0.632

  recA Lactococcus lactis subsp. cremoris KW2

66.364

94.017

0.624

  recA Neisseria gonorrhoeae MS11

65.758

94.017

0.618

  recA Neisseria gonorrhoeae strain FA1090

65.758

94.017

0.618

  recA Neisseria gonorrhoeae MS11

65.758

94.017

0.618

  recA Ralstonia pseudosolanacearum GMI1000

66.564

92.877

0.618

  recA Acinetobacter baumannii D1279779

61.671

98.86

0.61

  recA Helicobacter pylori 26695

61.988

97.436

0.604

  recA Helicobacter pylori strain NCTC11637

61.988

97.436

0.604

  recA Pseudomonas stutzeri DSM 10701

64.134

93.732

0.601

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.329

93.447

0.601

  recA Glaesserella parasuis strain SC1401

65.217

91.738

0.598

  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.109

91.453

0.595

  recA Vibrio cholerae strain A1552

65.109

91.453

0.595

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.333

94.017

0.595

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.187

91.168

0.567