Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QWY16_RS12575 Genome accession   NZ_CP129235
Coordinates   2532401..2533654 (-) Length   417 a.a.
NCBI ID   WP_300989567.1    Uniprot ID   -
Organism   Planococcus sp. N016     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2527401..2538654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWY16_RS12560 (QWY16_12560) - 2528463..2529260 (-) 798 WP_300989564.1 TIGR00282 family metallophosphoesterase -
  QWY16_RS12565 (QWY16_12565) rny 2529328..2530887 (-) 1560 WP_300989565.1 ribonuclease Y -
  QWY16_RS12570 (QWY16_12570) recA 2531171..2532226 (-) 1056 WP_300989566.1 recombinase RecA Machinery gene
  QWY16_RS12575 (QWY16_12575) cinA 2532401..2533654 (-) 1254 WP_300989567.1 competence/damage-inducible protein A Machinery gene
  QWY16_RS12580 (QWY16_12580) pgsA 2533685..2534263 (-) 579 WP_300989568.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QWY16_RS12585 (QWY16_12585) - 2534312..2535202 (-) 891 WP_300989569.1 RodZ domain-containing protein -
  QWY16_RS12590 (QWY16_12590) - 2535220..2536017 (-) 798 WP_300989570.1 DUF3388 domain-containing protein -
  QWY16_RS12595 (QWY16_12595) - 2536223..2536942 (-) 720 WP_300989571.1 SDR family oxidoreductase -
  QWY16_RS12600 (QWY16_12600) - 2536939..2538240 (-) 1302 WP_300989572.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45455.75 Da        Isoelectric Point: 4.6415

>NTDB_id=851720 QWY16_RS12575 WP_300989567.1 2532401..2533654(-) (cinA) [Planococcus sp. N016]
MNAEIIAVGSELLLGQITNTNARFLSSHLAELGINVYYHTVVGDNAGRLEDVIKIAEERADLIIFTGGLGPTKDDLTKET
IARHLGTTLEMDAYALESIEAFFERARRVMTENNKKQALVLKDSEVLVNNHGMAPGMLYKNDGRVYILLPGPPKEMEPMF
QFEGKPKLARLLNQADVILSHVLRFYGIGEAELEDRLQDLLDRQTNPTIAPLASDGEVTLRITAKTATEEQAWELINKAK
KEILDDVGEYLYGYDDDSLASKTIELLNEQSKTISAAESLTAGLFQSELAAVAGASAVLSGGVIAYNEEMKITQLGLSPE
LLKEYGVVSEETAIAMAEAVREKFSTDISVGLTGAAGPDAHGNQPAGTVWIGIATAEETKAYRLQLSGMRNTNRLRAVKL
ALSYIIRTLTEGNARKI

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=851720 QWY16_RS12575 WP_300989567.1 2532401..2533654(-) (cinA) [Planococcus sp. N016]
ATGAATGCGGAAATTATTGCAGTGGGATCGGAACTTTTGCTTGGTCAAATCACAAACACGAATGCGCGTTTTTTATCCAG
CCATTTGGCGGAACTTGGCATTAATGTGTACTACCACACTGTTGTCGGCGACAATGCCGGCCGCTTGGAGGATGTCATTA
AAATTGCTGAAGAGCGCGCTGATTTAATCATCTTTACCGGTGGCCTTGGCCCGACAAAAGATGATTTGACAAAAGAAACC
ATAGCCCGCCATTTAGGGACAACACTTGAAATGGATGCATATGCCCTGGAATCCATTGAGGCATTTTTTGAGCGGGCTAG
ACGGGTAATGACGGAAAACAATAAGAAACAGGCGCTTGTTTTAAAAGACAGTGAAGTGCTGGTCAATAACCATGGGATGG
CTCCGGGAATGCTGTATAAAAATGATGGCCGGGTGTATATTTTGCTGCCGGGACCGCCAAAAGAAATGGAACCGATGTTC
CAGTTTGAAGGTAAACCGAAATTGGCTCGTTTATTGAATCAAGCGGATGTCATTTTATCTCATGTCTTGCGTTTTTACGG
CATTGGGGAAGCGGAACTGGAAGACCGCCTGCAGGATTTGCTGGACCGGCAAACCAATCCGACTATTGCCCCGCTAGCAT
CTGACGGAGAAGTGACGCTTCGCATTACCGCGAAAACGGCCACAGAAGAGCAGGCTTGGGAATTGATCAACAAAGCGAAA
AAAGAGATTTTAGATGATGTAGGGGAATATCTCTATGGTTATGATGACGATTCACTTGCTTCCAAAACGATTGAATTATT
GAATGAGCAATCGAAAACAATTTCAGCTGCTGAAAGTTTAACAGCTGGACTTTTCCAATCAGAGCTGGCAGCAGTAGCTG
GAGCGAGTGCGGTTCTTTCAGGCGGAGTGATTGCCTATAACGAAGAAATGAAAATTACTCAGCTTGGGTTGTCTCCTGAG
CTGCTTAAAGAATACGGCGTAGTCAGTGAAGAAACTGCCATTGCGATGGCTGAAGCAGTCCGTGAGAAGTTCAGCACGGA
TATCAGTGTCGGCTTGACAGGGGCTGCAGGGCCGGATGCTCATGGCAATCAGCCGGCTGGAACCGTCTGGATCGGCATCG
CGACAGCCGAGGAAACCAAAGCTTACCGGCTTCAATTATCGGGAATGCGCAATACGAACCGTCTGAGAGCGGTAAAATTG
GCGCTTTCTTATATCATACGAACACTGACAGAAGGAAATGCACGCAAAATTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.589

98.082

0.506
  cinA Streptococcus mutans UA159

47.101

99.281

0.468
  cinA Streptococcus mitis SK321

45.346

100

0.456
  cinA Streptococcus mitis NCTC 12261

44.869

100

0.451
  cinA Streptococcus pneumoniae TIGR4

44.63

100

0.448
  cinA Streptococcus pneumoniae Rx1

44.391

100

0.446
  cinA Streptococcus pneumoniae R6

44.391

100

0.446
  cinA Streptococcus pneumoniae D39

44.153

100

0.444
  cinA Streptococcus suis isolate S10

39.796

94.005

0.374