Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LC087_RS04740 Genome accession   NZ_CP129013
Coordinates   935977..937020 (-) Length   347 a.a.
NCBI ID   WP_226538272.1    Uniprot ID   -
Organism   Bacillus carboniphilus strain SaN35-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 930977..942020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC087_RS04720 (LC087_04720) - 931597..932520 (-) 924 WP_226538270.1 dipeptidase -
  LC087_RS04725 (LC087_04725) spoVS 932792..933052 (-) 261 WP_119116493.1 stage V sporulation protein SpoVS -
  LC087_RS04730 (LC087_04730) - 933227..934026 (-) 800 Protein_931 TIGR00282 family metallophosphoesterase -
  LC087_RS04735 (LC087_04735) rny 934111..935674 (-) 1564 Protein_932 ribonuclease Y -
  LC087_RS04740 (LC087_04740) recA 935977..937020 (-) 1044 WP_226538272.1 recombinase RecA Machinery gene
  LC087_RS04745 (LC087_04745) cinA 937592..938836 (-) 1245 WP_226538273.1 competence/damage-inducible protein A Machinery gene
  LC087_RS04750 (LC087_04750) pgsA 938877..939455 (-) 579 WP_226538274.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LC087_RS04755 (LC087_04755) - 939508..940377 (-) 870 WP_226538275.1 RodZ domain-containing protein -
  LC087_RS04760 (LC087_04760) - 940398..941187 (-) 790 Protein_937 DUF3388 domain-containing protein -
  LC087_RS04765 (LC087_04765) - 941504..941761 (-) 258 WP_226538277.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37688.77 Da        Isoelectric Point: 4.9113

>NTDB_id=850506 LC087_RS04740 WP_226538272.1 935977..937020(-) (recA) [Bacillus carboniphilus strain SaN35-3]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTDRKVSTVPSGSLALDAALGIGGYPRGRIIETYGPESSGKTTVALHAIAE
VQAQGGQAAFIDAEHALDPTYAKNLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDA
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNEMVGNKT
RIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGSNLDIIQKSGSWYSYNDERLGQGRENAKLFLKENPDILQTVQEE
IRKHYGLQTGADELEEGQEQLELDENK

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=850506 LC087_RS04740 WP_226538272.1 935977..937020(-) (recA) [Bacillus carboniphilus strain SaN35-3]
ATGAGTGATCGCCAAGCTGCTTTAGATATGGCACTTAAACAAATAGAAAAACAATTCGGTAAAGGATCGATAATGAAGTT
AGGTGAGCAAACAGACAGAAAAGTCTCGACTGTCCCAAGTGGATCTCTAGCACTAGATGCTGCATTAGGTATAGGTGGGT
ATCCTCGTGGACGAATCATTGAAACATATGGTCCAGAAAGCTCAGGTAAAACGACTGTTGCATTGCACGCGATAGCAGAG
GTTCAGGCTCAAGGAGGCCAAGCTGCATTTATTGATGCTGAGCATGCTTTAGACCCTACCTATGCTAAAAACTTAGGTGT
AAACATTGAAGAATTATTACTTTCACAGCCTGACACAGGGGAACAAGCGCTTGAAATTGCTGAAGCCTTAGTAAGAAGTG
GAGCTGTAGATATTATCGTCATTGACTCAGTGGCGGCATTAGTTCCTAAGGCTGAAATAGAAGGTGAAATGGGAGATGCG
CATGTTGGGCTTCAAGCAAGACTCATGTCTCAAGCATTAAGAAAGTTATCAGGTGCCATTAATAAATCGAAAACAATTGC
CATCTTTATAAACCAAATTCGTGAAAAGGTTGGTGTCATGTTTGGGAATCCAGAAACGACACCTGGTGGAAGAGCGTTAA
AGTTTTACTCATCTGTCCGTCTAGAGGTTAGAAGAGCTGAAACGTTAAAACAAGGAAATGAAATGGTAGGAAATAAGACG
AGAATTAAAGTTGTCAAAAACAAAGTGGCACCGCCATTTCGAACAGCTGAAGTCGACATCATGTATGGAGAAGGGATATC
TAAAGAAGGTGAAATTATCGATTTAGGTTCTAATTTAGATATTATTCAAAAAAGTGGTTCTTGGTATTCTTATAATGATG
AAAGACTAGGTCAAGGTAGAGAAAATGCGAAGCTGTTCCTTAAAGAAAACCCAGATATACTTCAAACTGTTCAAGAAGAA
ATCCGTAAACATTACGGTTTGCAAACAGGTGCAGACGAGTTAGAGGAAGGTCAAGAGCAGCTTGAACTAGATGAAAATAA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

90.214

94.236

0.85
  recA Latilactobacillus sakei subsp. sakei 23K

76.308

93.66

0.715
  recA Streptococcus pneumoniae R6

66.286

100

0.669
  recA Streptococcus pneumoniae Rx1

66.286

100

0.669
  recA Streptococcus pneumoniae D39

66.286

100

0.669
  recA Streptococcus pneumoniae TIGR4

66.286

100

0.669
  recA Streptococcus mutans UA159

66.57

99.135

0.66
  recA Streptococcus mitis NCTC 12261

68.168

95.965

0.654
  recA Streptococcus mitis SK321

65.988

99.135

0.654
  recA Streptococcus pyogenes NZ131

67.378

94.524

0.637
  recA Lactococcus lactis subsp. cremoris KW2

66.667

95.101

0.634
  recA Ralstonia pseudosolanacearum GMI1000

65.443

94.236

0.617
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.647

97.983

0.614
  recA Neisseria gonorrhoeae strain FA1090

64.526

94.236

0.608
  recA Neisseria gonorrhoeae MS11

64.526

94.236

0.608
  recA Neisseria gonorrhoeae MS11

64.526

94.236

0.608
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.798

92.507

0.599
  recA Vibrio cholerae strain A1552

64.798

92.507

0.599
  recA Acinetobacter baylyi ADP1

60

99.424

0.597
  recA Helicobacter pylori strain NCTC11637

63.077

93.66

0.591
  recA Helicobacter pylori 26695

63.077

93.66

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.577

93.948

0.588
  recA Glaesserella parasuis strain SC1401

63.636

91.931

0.585
  recA Pseudomonas stutzeri DSM 10701

63.125

92.219

0.582
  recA Acinetobacter baumannii D1279779

60.909

95.101

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

92.219

0.553