Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LC087_RS04745 Genome accession   NZ_CP129013
Coordinates   937592..938836 (-) Length   414 a.a.
NCBI ID   WP_226538273.1    Uniprot ID   -
Organism   Bacillus carboniphilus strain SaN35-3     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 932592..943836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC087_RS04725 (LC087_04725) spoVS 932792..933052 (-) 261 WP_119116493.1 stage V sporulation protein SpoVS -
  LC087_RS04730 (LC087_04730) - 933227..934026 (-) 800 Protein_931 TIGR00282 family metallophosphoesterase -
  LC087_RS04735 (LC087_04735) rny 934111..935674 (-) 1564 Protein_932 ribonuclease Y -
  LC087_RS04740 (LC087_04740) recA 935977..937020 (-) 1044 WP_226538272.1 recombinase RecA Machinery gene
  LC087_RS04745 (LC087_04745) cinA 937592..938836 (-) 1245 WP_226538273.1 competence/damage-inducible protein A Machinery gene
  LC087_RS04750 (LC087_04750) pgsA 938877..939455 (-) 579 WP_226538274.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LC087_RS04755 (LC087_04755) - 939508..940377 (-) 870 WP_226538275.1 RodZ domain-containing protein -
  LC087_RS04760 (LC087_04760) - 940398..941187 (-) 790 Protein_937 DUF3388 domain-containing protein -
  LC087_RS04765 (LC087_04765) - 941504..941761 (-) 258 WP_226538277.1 DUF3243 domain-containing protein -
  LC087_RS04770 (LC087_04770) ymfI 941859..942560 (-) 702 WP_226538278.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45996.99 Da        Isoelectric Point: 6.5121

>NTDB_id=850507 LC087_RS04745 WP_226538273.1 937592..938836(-) (cinA) [Bacillus carboniphilus strain SaN35-3]
MNAEIIAVGSELLLGQIANTNAQFISEYLAEMGVDVYYHTVVGDNEQRLLDALNVAEKRASLIILTGGLGPTKDDLTKET
VSKRLGIPLIYDEPSLNFIKGYYQKVNKEMPQNNKKQALVLEGAHVLKNDYGMAPGMALNYHDHYYLLLPGPPSEMKPMV
LNYVVPYVKEQLKMEEMIKSRVLRFFGIGESKLEEDILDLLEMQKNPTIAPLAKSGEVTLRLTAKGKERNEIDENLDHLE
QKIHARVGNYFYGYGETTLPIELMKKLTESKQTIAAAESLTGGLFSQWISAISGASSVFKGSIVSYSNEVKMTVLGVPTD
LIEKHGVVSEQCAKAMAEKVRKISNTDIGISFTGVAGPEALEDHEPGTVYVGLSIRNQQTEAFSLKLSGTREMIRRYSAN
YGCYILLKRLFKKS

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=850507 LC087_RS04745 WP_226538273.1 937592..938836(-) (cinA) [Bacillus carboniphilus strain SaN35-3]
ATGAACGCAGAAATAATCGCGGTAGGTTCGGAATTACTACTTGGTCAAATCGCCAATACAAACGCTCAATTTATTAGTGA
ATATCTTGCTGAGATGGGTGTGGATGTTTATTATCATACAGTTGTAGGAGATAATGAACAAAGGCTTTTAGATGCTTTAA
ACGTGGCAGAAAAAAGGGCATCTCTTATCATACTAACTGGAGGATTAGGTCCGACCAAAGATGATTTAACAAAAGAAACG
GTATCAAAACGGTTGGGAATTCCTTTAATATACGATGAACCATCACTAAACTTTATAAAAGGCTACTACCAAAAAGTAAA
TAAAGAAATGCCTCAAAATAATAAAAAGCAAGCGCTCGTTTTAGAAGGTGCCCATGTTCTTAAAAATGATTATGGAATGG
CACCGGGTATGGCTTTAAACTATCACGATCACTATTATTTGTTACTACCTGGGCCACCAAGTGAAATGAAACCAATGGTT
TTGAATTATGTAGTTCCTTATGTAAAAGAACAATTAAAAATGGAAGAGATGATTAAGTCAAGAGTCTTGCGATTTTTTGG
GATCGGGGAATCGAAATTAGAAGAAGACATACTCGATCTTTTAGAAATGCAAAAAAATCCAACCATTGCTCCTTTAGCTA
AAAGCGGTGAGGTAACTCTTCGTCTAACTGCAAAAGGCAAGGAGAGAAATGAAATCGATGAAAATCTGGATCATCTTGAA
CAAAAAATCCATGCAAGAGTAGGAAATTATTTTTACGGCTATGGTGAGACGACTTTACCGATTGAGTTGATGAAAAAGTT
GACTGAAAGTAAACAAACGATCGCTGCCGCTGAAAGTTTAACTGGAGGCCTTTTTTCACAATGGATCTCGGCAATATCGG
GCGCTTCTTCTGTTTTCAAAGGAAGCATTGTGTCGTATTCGAACGAGGTGAAAATGACAGTTCTAGGTGTTCCAACAGAT
CTGATCGAAAAACACGGAGTAGTAAGTGAACAATGTGCAAAAGCAATGGCAGAGAAGGTAAGAAAAATATCGAATACGGA
TATTGGGATCAGTTTTACTGGGGTTGCAGGTCCAGAAGCGCTTGAGGATCATGAACCTGGTACAGTCTATGTTGGGTTAT
CTATAAGAAACCAACAAACGGAAGCATTTTCTTTGAAGTTATCTGGAACAAGGGAAATGATTAGAAGGTATTCAGCAAAT
TATGGTTGTTATATTTTATTAAAGAGGCTGTTCAAAAAGTCCTAG

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(260-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

53.528

99.275

0.531
  cinA Streptococcus pneumoniae TIGR4

47.608

100

0.481
  cinA Streptococcus mitis NCTC 12261

47.368

100

0.478
  cinA Streptococcus mitis SK321

47.129

100

0.476
  cinA Streptococcus pneumoniae Rx1

47.129

100

0.476
  cinA Streptococcus pneumoniae R6

47.129

100

0.476
  cinA Streptococcus pneumoniae D39

46.89

100

0.473
  cinA Streptococcus mutans UA159

46.247

99.758

0.461
  cinA Streptococcus suis isolate S10

40.741

91.304

0.372