Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QN310_RS17615 Genome accession   NZ_CP128411
Coordinates   3653410..3654468 (-) Length   352 a.a.
NCBI ID   WP_016743382.1    Uniprot ID   -
Organism   Brevibacillus brevis strain HNCS-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3648410..3659468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN310_RS17590 (QN310_17590) - 3648555..3649493 (-) 939 WP_289673405.1 dipeptidase -
  QN310_RS17595 (QN310_17595) spoVS 3649602..3649862 (-) 261 WP_003385776.1 stage V sporulation protein SpoVS -
  QN310_RS17600 (QN310_17600) - 3649981..3650775 (-) 795 WP_172140580.1 TIGR00282 family metallophosphoesterase -
  QN310_RS17605 (QN310_17605) rny 3650885..3652426 (-) 1542 WP_007719154.1 ribonuclease Y -
  QN310_RS17610 (QN310_17610) - 3652699..3653340 (-) 642 WP_289673406.1 RecX family transcriptional regulator -
  QN310_RS17615 (QN310_17615) recA 3653410..3654468 (-) 1059 WP_016743382.1 recombinase RecA Machinery gene
  QN310_RS17620 (QN310_17620) - 3654634..3656223 (-) 1590 WP_289673407.1 DEAD/DEAH box helicase -
  QN310_RS17625 (QN310_17625) cinA 3656232..3657476 (-) 1245 WP_289678113.1 competence/damage-inducible protein A Machinery gene
  QN310_RS17630 (QN310_17630) pgsA 3657584..3658159 (-) 576 WP_047067774.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37937.15 Da        Isoelectric Point: 4.8366

>NTDB_id=847376 QN310_RS17615 WP_016743382.1 3653410..3654468(-) (recA) [Brevibacillus brevis strain HNCS-1]
MSDRRAALESALRQIEKQFGKGSIMKLGEVSNVQISTVSSGALALDIALGVGGFPRGRIIEIYGPESSGKTTVALHAIAE
VQRQGGQAAFIDAEHALDPVYAAKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRKAESIKVGNDILGSKT
KIKVVKNKVAPPFKVAEVDIMYGEGISREGSILDIGSEIDVVQKSGAWYSFNEERLGQGRENSKVFLKENPHIASQIETK
VREYFSLNPGSVPEIEPENDPEQDEEPTFDLE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=847376 QN310_RS17615 WP_016743382.1 3653410..3654468(-) (recA) [Brevibacillus brevis strain HNCS-1]
TTGTCAGATCGTCGCGCAGCTTTGGAGAGTGCATTGCGTCAAATAGAAAAGCAATTCGGTAAAGGTTCCATTATGAAGTT
GGGGGAAGTATCCAACGTTCAGATTTCTACTGTATCGAGCGGAGCGCTTGCTCTTGATATCGCACTTGGTGTGGGCGGAT
TCCCACGTGGACGGATTATTGAGATTTACGGACCGGAGTCTTCTGGTAAAACAACCGTGGCACTTCATGCAATCGCAGAA
GTGCAAAGACAAGGCGGACAGGCTGCATTTATCGATGCTGAGCATGCCTTGGATCCGGTTTACGCTGCAAAGCTGGGTGT
GAACATCGACGAATTGCTGTTGTCCCAACCAGATACGGGTGAGCAAGCTTTGGAGATCGCGGAAGCATTGGTACGTTCTG
GTGCAGTAGACATTATCGTAGTTGACTCCGTTGCGGCTCTCGTGCCAAAAGCAGAGATCGAGGGCGAGATGGGAGATTCC
CACGTAGGTTTGCAAGCACGCTTGATGTCCCAAGCACTCCGCAAGCTGTCTGGTGCCATCAATAAGTCCAAGACGATTGC
GATCTTCATCAACCAGCTTCGCGAAAAAGTGGGAGTTATGTTCGGTAACCCGGAAACAACGCCAGGTGGACGCGCTTTGA
AGTTCTACGCGAGTGTTCGTTTGGATGTTCGTAAAGCGGAATCTATCAAAGTCGGAAACGACATTTTGGGTAGCAAGACG
AAGATCAAAGTTGTCAAAAATAAAGTGGCTCCACCATTTAAGGTTGCTGAAGTGGACATCATGTACGGTGAAGGTATTTC
CAGAGAAGGTAGCATCCTCGACATCGGTTCTGAGATTGATGTCGTGCAAAAGAGTGGTGCTTGGTATTCCTTCAACGAAG
AGCGTCTCGGCCAAGGTAGAGAAAATTCGAAGGTCTTCCTGAAGGAAAATCCGCATATTGCCTCTCAGATTGAAACAAAA
GTGCGCGAATACTTCAGTCTGAACCCTGGCTCTGTTCCAGAAATTGAGCCAGAAAATGACCCAGAGCAAGATGAAGAGCC
TACATTTGATCTGGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

81.928

94.318

0.773
  recA Latilactobacillus sakei subsp. sakei 23K

70.76

97.159

0.687
  recA Streptococcus mitis NCTC 12261

66.48

100

0.676
  recA Streptococcus pneumoniae Rx1

67.33

100

0.673
  recA Streptococcus pneumoniae D39

67.33

100

0.673
  recA Streptococcus pneumoniae R6

67.33

100

0.673
  recA Streptococcus pneumoniae TIGR4

67.33

100

0.673
  recA Streptococcus mitis SK321

65.922

100

0.67
  recA Streptococcus mutans UA159

65.254

100

0.656
  recA Streptococcus pyogenes NZ131

70.336

92.898

0.653
  recA Lactococcus lactis subsp. cremoris KW2

68.485

93.75

0.642
  recA Neisseria gonorrhoeae MS11

62.319

98.011

0.611
  recA Neisseria gonorrhoeae MS11

62.319

98.011

0.611
  recA Neisseria gonorrhoeae strain FA1090

62.319

98.011

0.611
  recA Vibrio cholerae strain A1552

65.443

92.898

0.608
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.443

92.898

0.608
  recA Ralstonia pseudosolanacearum GMI1000

67.619

89.489

0.605
  recA Acinetobacter baumannii D1279779

60.571

99.432

0.602
  recA Glaesserella parasuis strain SC1401

64.134

93.466

0.599
  recA Pseudomonas stutzeri DSM 10701

60.35

97.443

0.588
  recA Acinetobacter baylyi ADP1

60

98.011

0.588
  recA Helicobacter pylori 26695

58.405

99.716

0.582
  recA Helicobacter pylori strain NCTC11637

58.12

99.716

0.58
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.551

91.193

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.468

92.898

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.187

90.909

0.565