Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QN310_RS17625 Genome accession   NZ_CP128411
Coordinates   3656232..3657476 (-) Length   414 a.a.
NCBI ID   WP_289678113.1    Uniprot ID   -
Organism   Brevibacillus brevis strain HNCS-1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3651232..3662476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN310_RS17610 (QN310_17610) - 3652699..3653340 (-) 642 WP_289673406.1 RecX family transcriptional regulator -
  QN310_RS17615 (QN310_17615) recA 3653410..3654468 (-) 1059 WP_016743382.1 recombinase RecA Machinery gene
  QN310_RS17620 (QN310_17620) - 3654634..3656223 (-) 1590 WP_289673407.1 DEAD/DEAH box helicase -
  QN310_RS17625 (QN310_17625) cinA 3656232..3657476 (-) 1245 WP_289678113.1 competence/damage-inducible protein A Machinery gene
  QN310_RS17630 (QN310_17630) pgsA 3657584..3658159 (-) 576 WP_047067774.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QN310_RS17635 (QN310_17635) rimO 3658160..3659506 (-) 1347 WP_064202400.1 30S ribosomal protein S12 methylthiotransferase RimO -
  QN310_RS17640 (QN310_17640) - 3659618..3660517 (-) 900 WP_015891683.1 RodZ domain-containing protein -
  QN310_RS17645 (QN310_17645) - 3660530..3661309 (-) 780 WP_016743377.1 YmfK family protein -
  QN310_RS17650 (QN310_17650) - 3661418..3661687 (-) 270 WP_015891685.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44912.49 Da        Isoelectric Point: 5.1885

>NTDB_id=847377 QN310_RS17625 WP_289678113.1 3656232..3657476(-) (cinA) [Brevibacillus brevis strain HNCS-1]
MRAEIIAVGTELLLGQIANTNAQFLSQKLAEIGVGVYFHTVVGDNTERLLQVIRLASGRSDLVIFTGGLGPTQDDLTKET
VAGHVGIGLETNSEAMERIEKFFSQRGIVMTENNRKQALVLSGSHVFSNDFGMAPGMAIRHDSSTFVLLPGPPSEMYPMV
ENYVMPYLTDLLPDKQVFHSHVLRFYGIGESALEEKLLDLIEKQDNPTIAPYAKEFEVTLRITARAATVEEGETLILPVE
KEILSRVGQYMYGMGENSSLHDLLVSELKKRNETIACAESCTGGAIASLITAVPGSSQVFRGGVVCYTNEVKNQLLEVPD
SILQTDGAVSEKTAQLLAEHVREKLGATYGISVTGVAGPDPSEGKPVGLVYVGIAAEGMPTVVKELRLAGRRHAIVGRAA
KYALFYALQMQKER

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=847377 QN310_RS17625 WP_289678113.1 3656232..3657476(-) (cinA) [Brevibacillus brevis strain HNCS-1]
ATGAGAGCGGAGATTATCGCGGTAGGTACCGAACTTTTGTTAGGCCAGATCGCTAACACCAACGCACAGTTTCTTTCTCA
GAAGCTGGCGGAAATTGGCGTGGGAGTTTACTTTCATACGGTTGTGGGAGACAACACGGAGCGATTGCTACAAGTGATTC
GATTGGCATCAGGACGATCTGATCTCGTCATTTTCACGGGTGGGCTAGGGCCGACTCAAGATGATTTGACGAAAGAAACC
GTGGCGGGGCATGTAGGCATTGGATTGGAAACGAATTCAGAGGCCATGGAGAGAATTGAAAAATTCTTTTCGCAACGTGG
GATTGTCATGACGGAGAACAATCGTAAGCAGGCGCTGGTGCTTTCTGGCAGCCATGTATTCTCCAACGATTTCGGGATGG
CGCCGGGGATGGCGATCCGTCATGACAGTAGTACGTTCGTGCTATTGCCTGGACCACCTAGTGAGATGTATCCAATGGTG
GAGAATTACGTGATGCCGTACTTGACCGATTTGCTCCCCGATAAACAAGTGTTTCATTCTCATGTACTCCGGTTCTACGG
AATAGGCGAATCCGCTTTGGAGGAAAAACTGCTTGATCTGATCGAAAAGCAGGACAATCCAACGATCGCTCCATACGCCA
AAGAATTCGAAGTAACGCTGCGAATTACGGCAAGAGCTGCGACAGTCGAAGAAGGAGAAACCTTGATTTTACCTGTAGAA
AAAGAAATTCTCAGCCGTGTTGGTCAGTACATGTACGGGATGGGCGAGAACTCGTCACTGCATGATTTGCTAGTTTCTGA
GTTGAAAAAGAGAAATGAGACAATTGCTTGTGCAGAAAGCTGTACAGGTGGAGCGATTGCCTCGTTGATTACCGCTGTGC
CAGGAAGCTCACAAGTGTTTCGTGGCGGGGTAGTCTGCTACACCAATGAAGTGAAAAATCAGCTGCTCGAAGTACCTGAT
TCCATTTTGCAAACAGATGGGGCAGTCAGTGAAAAAACAGCTCAATTACTGGCTGAACATGTACGAGAAAAGCTGGGAGC
TACTTACGGGATTTCCGTTACGGGAGTGGCTGGACCCGATCCTTCCGAGGGCAAGCCTGTTGGCCTTGTTTACGTAGGGA
TCGCGGCAGAAGGAATGCCCACAGTTGTAAAAGAGCTGCGCCTTGCCGGAAGAAGGCATGCAATCGTTGGGCGTGCCGCT
AAATACGCGTTGTTTTATGCGTTGCAAATGCAAAAAGAAAGGTGA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.816

99.758

0.517
  cinA Streptococcus mitis SK321

48.267

97.585

0.471
  cinA Streptococcus mitis NCTC 12261

48.02

97.585

0.469
  cinA Streptococcus pneumoniae TIGR4

47.772

97.585

0.466
  cinA Streptococcus pneumoniae Rx1

47.525

97.585

0.464
  cinA Streptococcus pneumoniae R6

47.525

97.585

0.464
  cinA Streptococcus pneumoniae D39

47.277

97.585

0.461
  cinA Streptococcus mutans UA159

45.363

96.377

0.437
  cinA Streptococcus suis isolate S10

40.506

95.411

0.386