Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QRE67_RS17415 Genome accession   NZ_CP128153
Coordinates   3500503..3501537 (-) Length   344 a.a.
NCBI ID   WP_286121485.1    Uniprot ID   -
Organism   Bacillus sp. DX3.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3495503..3506537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRE67_RS17395 (QRE67_17385) - 3496102..3497025 (-) 924 WP_286121481.1 dipeptidase -
  QRE67_RS17400 (QRE67_17390) spoVS 3497087..3497347 (-) 261 WP_286121482.1 stage V sporulation protein SpoVS -
  QRE67_RS17405 (QRE67_17395) - 3497498..3498292 (-) 795 WP_286121483.1 TIGR00282 family metallophosphoesterase -
  QRE67_RS17410 (QRE67_17400) rny 3498483..3500045 (-) 1563 WP_286121484.1 ribonuclease Y -
  QRE67_RS17415 (QRE67_17405) recA 3500503..3501537 (-) 1035 WP_286121485.1 recombinase RecA Machinery gene
  QRE67_RS17420 (QRE67_17410) cinA 3501682..3502920 (-) 1239 WP_286121486.1 competence/damage-inducible protein A Machinery gene
  QRE67_RS17425 (QRE67_17415) pgsA 3502941..3503519 (-) 579 WP_286121487.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QRE67_RS17430 (QRE67_17420) - 3503584..3504504 (-) 921 WP_286121488.1 helix-turn-helix domain-containing protein -
  QRE67_RS17435 (QRE67_17425) - 3504526..3505311 (-) 786 WP_242144577.1 DUF3388 domain-containing protein -
  QRE67_RS17440 (QRE67_17430) - 3505450..3505698 (-) 249 WP_286121489.1 DUF3243 domain-containing protein -
  QRE67_RS17445 (QRE67_17435) - 3505779..3506492 (-) 714 WP_286121490.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37353.31 Da        Isoelectric Point: 5.0761

>NTDB_id=846349 QRE67_RS17415 WP_286121485.1 3500503..3501537(-) (recA) [Bacillus sp. DX3.1]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERRISTISSGSLALDVALGVGGYPRGRVIEIYGPESSGKTTVSLHAIAE
VQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT
KIKVVKNKVAPPFRVAEVDIMYGEGISRQGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENPELTDEIAFF
IREHHGIGEGSNSESGENTDLSNE

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=846349 QRE67_RS17415 WP_286121485.1 3500503..3501537(-) (recA) [Bacillus sp. DX3.1]
ATGAGTGATCGTCAAGCGGCATTAGATATGGCGTTAAAACAAATAGAGAAGCAATTCGGTAAAGGTTCTATTATGAAATT
AGGGGAGCAAGCGGAACGTAGAATTTCTACGATTTCAAGTGGCTCGTTAGCACTTGATGTAGCTCTTGGTGTCGGTGGCT
ATCCACGAGGTCGTGTTATTGAAATCTACGGGCCTGAAAGTTCAGGTAAAACAACAGTTTCGTTACATGCGATTGCAGAG
GTGCAACGTCAAGGCGGACAAGCAGCATTTATTGATGCAGAGCATGCGATGGATCCGGTATATGCACAAAAATTAGGTGT
TAATATTGATGAATTACTATTATCACAACCAGATACAGGTGAACAAGGTTTGGAAATCGCAGAGGCATTAGTACGAAGTG
GTGCAGTTGACATTATCGTTATTGACTCTGTAGCAGCTCTTGTTCCAAAAGCGGAAATTGAAGGTGAAATGGGTGACTCT
CACGTTGGTTTACAAGCACGTTTAATGTCACAAGCGCTTCGTAAGCTTTCTGGTGCAATTAACAAGTCTAAAACAATCGC
TATCTTTATTAACCAAATTCGTGAAAAAGTTGGGGTTATGTTCGGGAACCCAGAAACAACTCCAGGTGGTCGTGCGTTGA
AATTCTATTCAACAGTGCGTCTTGAAGTGCGTCGTGCTGAGCAGTTAAAACAAGGTAACGACATTGTTGGTAATAAAACA
AAAATAAAAGTAGTAAAAAATAAAGTGGCACCTCCTTTCCGCGTAGCAGAAGTTGATATTATGTACGGAGAAGGGATTTC
AAGACAAGGTGAGATTTTAGATATGGCTTCTGAACTTGATATTGTCCAAAAGAGTGGAGCATGGTATTCCTATAATGAGG
AGCGCTTAGGGCAAGGTCGTGAAAATTCAAAGCAATTTTTAAAAGAAAATCCAGAGCTAACAGATGAAATTGCATTCTTT
ATTCGTGAGCATCATGGTATTGGTGAAGGATCTAATTCTGAAAGTGGAGAAAATACGGATCTTTCTAATGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

87.156

95.058

0.828
  recA Latilactobacillus sakei subsp. sakei 23K

76.147

95.058

0.724
  recA Streptococcus mutans UA159

67.742

99.128

0.672
  recA Streptococcus pneumoniae Rx1

69.369

96.802

0.672
  recA Streptococcus mitis NCTC 12261

69.369

96.802

0.672
  recA Streptococcus pneumoniae D39

69.369

96.802

0.672
  recA Streptococcus pneumoniae R6

69.369

96.802

0.672
  recA Streptococcus pneumoniae TIGR4

69.369

96.802

0.672
  recA Streptococcus pyogenes NZ131

70.122

95.349

0.669
  recA Streptococcus mitis SK321

68.452

97.674

0.669
  recA Lactococcus lactis subsp. cremoris KW2

67.576

95.93

0.648
  recA Neisseria gonorrhoeae strain FA1090

64.201

98.256

0.631
  recA Neisseria gonorrhoeae MS11

64.201

98.256

0.631
  recA Neisseria gonorrhoeae MS11

64.201

98.256

0.631
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.832

98.547

0.619
  recA Ralstonia pseudosolanacearum GMI1000

68.051

90.988

0.619
  recA Glaesserella parasuis strain SC1401

60.35

99.709

0.602
  recA Vibrio cholerae strain A1552

64.174

93.314

0.599
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.174

93.314

0.599
  recA Helicobacter pylori 26695

62.5

95.349

0.596
  recA Helicobacter pylori strain NCTC11637

62.5

95.349

0.596
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.08

95.058

0.59
  recA Pseudomonas stutzeri DSM 10701

62.813

93.023

0.584
  recA Acinetobacter baumannii D1279779

62.422

93.605

0.584
  recA Acinetobacter baylyi ADP1

62.422

93.605

0.584
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.076

91.86

0.561