Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QRE67_RS17420 Genome accession   NZ_CP128153
Coordinates   3501682..3502920 (-) Length   412 a.a.
NCBI ID   WP_286121486.1    Uniprot ID   -
Organism   Bacillus sp. DX3.1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3496682..3507920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRE67_RS17400 (QRE67_17390) spoVS 3497087..3497347 (-) 261 WP_286121482.1 stage V sporulation protein SpoVS -
  QRE67_RS17405 (QRE67_17395) - 3497498..3498292 (-) 795 WP_286121483.1 TIGR00282 family metallophosphoesterase -
  QRE67_RS17410 (QRE67_17400) rny 3498483..3500045 (-) 1563 WP_286121484.1 ribonuclease Y -
  QRE67_RS17415 (QRE67_17405) recA 3500503..3501537 (-) 1035 WP_286121485.1 recombinase RecA Machinery gene
  QRE67_RS17420 (QRE67_17410) cinA 3501682..3502920 (-) 1239 WP_286121486.1 competence/damage-inducible protein A Machinery gene
  QRE67_RS17425 (QRE67_17415) pgsA 3502941..3503519 (-) 579 WP_286121487.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QRE67_RS17430 (QRE67_17420) - 3503584..3504504 (-) 921 WP_286121488.1 helix-turn-helix domain-containing protein -
  QRE67_RS17435 (QRE67_17425) - 3504526..3505311 (-) 786 WP_242144577.1 DUF3388 domain-containing protein -
  QRE67_RS17440 (QRE67_17430) - 3505450..3505698 (-) 249 WP_286121489.1 DUF3243 domain-containing protein -
  QRE67_RS17445 (QRE67_17435) - 3505779..3506492 (-) 714 WP_286121490.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45449.10 Da        Isoelectric Point: 6.2389

>NTDB_id=846350 QRE67_RS17420 WP_286121486.1 3501682..3502920(-) (cinA) [Bacillus sp. DX3.1]
MNAEIIAVGTELLLGQITNTNAKFLSEKLALLGINVYYHTVVGDNNHRLQEAIQIAEKRADMLIFTGGLGPTKDDLTKET
IASSLQEELVYDEVALTSIGAYYKRTGREFTENNKKQALVLKGSTVFANDHGMAPGMGLTKNEKVFILLPGPPKEMKPMY
TSYVEPFLRNFTTGEHIYSRVLRFFGIGESQLEVKVQDLIDNQTNPTIAPLASEGEVTLRLTAKHHDVKQAEVLIQHVED
LILERVGEFFYGYNQDLLHHKAIALLKQKGLTLACAESLTGGLFGDQVTESAGVSSVFKGGVICYHNDVKQHILQVPEET
LQTMGAVSEQCARYLAENVKKLLKADIGISFTGVAGPDASEGKDPGTVFVGLAIEGKPTLAFPLILSGSRQQIRERSVKY
GFYHLYRKLEEM

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=846350 QRE67_RS17420 WP_286121486.1 3501682..3502920(-) (cinA) [Bacillus sp. DX3.1]
ATGAATGCCGAAATTATTGCGGTTGGAACAGAATTATTACTCGGGCAAATCACAAATACAAATGCGAAGTTTTTATCTGA
GAAGTTGGCCTTACTTGGAATTAATGTCTATTATCATACTGTTGTAGGTGATAATAATCACCGCTTACAAGAAGCAATTC
AAATTGCTGAGAAGCGAGCAGATATGTTAATTTTCACTGGAGGATTAGGGCCGACAAAAGACGATTTAACAAAGGAAACG
ATTGCATCTTCCTTACAAGAAGAACTTGTGTATGACGAAGTAGCACTAACGTCAATTGGCGCGTATTACAAGCGTACAGG
GCGTGAGTTTACAGAAAATAATAAGAAGCAAGCACTTGTTTTAAAAGGGTCGACTGTATTTGCAAATGATCACGGTATGG
CTCCAGGTATGGGATTGACCAAGAACGAGAAGGTATTTATTTTATTACCAGGTCCACCGAAAGAAATGAAGCCGATGTAT
ACAAGTTATGTAGAGCCGTTTTTACGTAACTTTACAACTGGTGAACATATATATTCTCGCGTTCTCCGCTTTTTCGGCAT
TGGAGAATCTCAACTAGAAGTGAAAGTTCAAGATTTAATTGATAACCAAACAAATCCAACGATTGCGCCGCTTGCTTCTG
AAGGAGAAGTAACACTTCGCCTGACTGCGAAACATCATGATGTTAAGCAAGCAGAAGTGTTGATTCAGCATGTGGAGGAT
TTAATTTTAGAAAGAGTAGGGGAATTCTTCTACGGATATAATCAAGATTTGCTTCATCATAAAGCGATTGCTCTATTGAA
GCAAAAAGGGTTAACATTGGCATGTGCGGAAAGTTTAACTGGTGGCCTTTTTGGCGATCAAGTGACTGAAAGTGCTGGTG
TATCTTCTGTATTTAAAGGCGGCGTGATCTGTTATCATAACGATGTGAAGCAACACATTTTGCAAGTACCAGAGGAAACA
TTACAAACAATGGGTGCTGTTAGTGAACAATGTGCTCGATACCTCGCTGAAAACGTTAAAAAACTTTTGAAGGCAGATAT
TGGTATTAGTTTTACTGGAGTTGCAGGTCCGGATGCTTCAGAAGGAAAAGATCCGGGGACTGTTTTTGTTGGCTTAGCAA
TAGAAGGGAAACCAACGCTTGCTTTTCCACTTATATTAAGTGGAAGCCGCCAGCAAATTCGAGAACGTTCTGTAAAATAT
GGGTTTTATCATTTATACAGAAAGCTAGAAGAGATGTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

56.585

99.515

0.563
  cinA Streptococcus mitis SK321

45.803

100

0.464
  cinA Streptococcus pneumoniae TIGR4

45.455

100

0.461
  cinA Streptococcus mutans UA159

46.437

98.786

0.459
  cinA Streptococcus mitis NCTC 12261

45.084

100

0.456
  cinA Streptococcus pneumoniae Rx1

44.976

100

0.456
  cinA Streptococcus pneumoniae R6

44.976

100

0.456
  cinA Streptococcus pneumoniae D39

44.737

100

0.454
  cinA Streptococcus suis isolate S10

40.318

91.505

0.369