Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   L6410_RS00460 Genome accession   NZ_AP024276
Coordinates   82625..83779 (+) Length   384 a.a.
NCBI ID   WP_024392836.1    Uniprot ID   A0A6L8MZ50
Organism   Streptococcus parasuis strain SUT-286     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 77625..88779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6410_RS00440 (SUT286_00710) mutL 77707..79644 (+) 1938 WP_237396594.1 DNA mismatch repair endonuclease MutL -
  L6410_RS00445 (SUT286_00720) ruvA 79683..80273 (+) 591 WP_237395572.1 Holliday junction branch migration protein RuvA -
  L6410_RS00450 (SUT286_00730) - 80787..81356 (+) 570 WP_237395574.1 DNA-3-methyladenine glycosylase I -
  L6410_RS00455 (SUT286_00740) cinA 81392..82573 (+) 1182 WP_237395575.1 competence/damage-inducible protein A Machinery gene
  L6410_RS00460 (SUT286_00750) recA 82625..83779 (+) 1155 WP_024392836.1 recombinase RecA Machinery gene
  L6410_RS00465 (SUT286_00760) spx 83994..84392 (+) 399 WP_024392835.1 transcriptional regulator Spx -
  L6410_RS00470 (SUT286_00770) - 84502..84768 (+) 267 WP_024392834.1 IreB family regulatory phosphoprotein -
  L6410_RS00475 (SUT286_00780) ruvX 84768..85187 (+) 420 WP_079269042.1 Holliday junction resolvase RuvX -
  L6410_RS00480 (SUT286_00790) - 85199..85519 (+) 321 WP_024392832.1 DUF1292 domain-containing protein -
  L6410_RS00485 (SUT286_00800) - 85844..86392 (+) 549 WP_237395576.1 nucleotidyltransferase family protein -
  L6410_RS00490 (SUT286_00810) comX/sigX 86575..87045 (+) 471 WP_024392830.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 41207.92 Da        Isoelectric Point: 4.7868

>NTDB_id=84456 L6410_RS00460 WP_024392836.1 82625..83779(+) (recA) [Streptococcus parasuis strain SUT-286]
MAKKPGKKLEDITKKFGDERKKALDDALKSIEKDFGKGAVMRLGERAEQKVQVMSSGSLSIDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSV
AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVR
GNTQIKGTGDQKDQNVGKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGEKIGQGS
ENAKKFLADNPAIFDEIDRKIRIHYGLIEADEEQEVVEAEEKTIAVEDIQDVVLDLDGGIELED

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=84456 L6410_RS00460 WP_024392836.1 82625..83779(+) (recA) [Streptococcus parasuis strain SUT-286]
TTGGCTAAGAAACCAGGAAAAAAACTAGAAGATATTACAAAAAAATTTGGAGATGAACGTAAAAAAGCGCTGGATGATGC
ACTAAAATCTATTGAAAAAGATTTTGGTAAGGGAGCTGTCATGCGTCTCGGTGAACGTGCAGAGCAAAAGGTTCAAGTTA
TGAGCTCAGGTAGTCTGTCTATTGATATTGCGCTTGGGGCAGGTGGTTATCCCAAAGGGCGTATCATTGAAATTTATGGT
CCAGAAAGTTCAGGTAAGACAACAGTTGCTCTTCATGCTGTGGCTCAAGCACAGAAAGAAGGTGGAATTGCAGCCTTTAT
TGATGCAGAACATGCTTTGGATCCAGCCTATGCAGCAGCCCTAGGGGTAAATATTGATGAATTACTTTTGTCGCAACCAG
ACTCAGGGGAACAAGGTCTTGAGATTGCAGGTAAGTTGATTGACTCTGGCGCGGTTGACTTAGTTGTCGTTGACTCTGTA
GCAGCTCTTGTACCTCGTGCAGAAATTGATGGTGATATTGGTGATAGTCACGTAGGTTTGCAAGCACGCATGATGAGTCA
GGCTATGCGTAAGCTGTCAGCTTCTATCAACAAGACCAAGACAATTGCTATCTTTATCAACCAGTTACGTGAAAAAGTTG
GGGTGATGTTTGGTAACCCTGAAACAACACCTGGTGGACGTGCTCTTAAGTTCTATGCATCTGTTCGTATGGATGTCCGC
GGAAATACGCAGATCAAAGGTACTGGCGATCAAAAAGATCAAAACGTTGGTAAGGAAACCAAGGTCAAGATTGTGAAGAA
TAAGGTAGCTCCTCCGTTTAAGGAAGCTGTCGTTGAAATCATGTATGGAGAGGGAATTTCTCGCACAGGTGAATTAATCG
AGATCGGTAGCAACCTTGGTATTATTCAAAAAGCAGGTGCCTGGTATTCTTATAATGGAGAAAAAATCGGACAAGGCTCT
GAAAATGCTAAGAAATTCTTGGCAGACAATCCAGCAATCTTTGATGAAATCGACCGTAAGATTCGTATTCACTATGGTTT
GATTGAAGCGGATGAAGAACAAGAAGTAGTGGAAGCAGAAGAAAAGACGATTGCTGTTGAAGATATACAAGATGTTGTAC
TTGATCTAGATGGTGGCATTGAGTTAGAAGATTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L8MZ50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

86.458

100

0.865
  recA Streptococcus pyogenes NZ131

85.677

100

0.857
  recA Streptococcus pneumoniae TIGR4

83.161

100

0.836
  recA Streptococcus pneumoniae Rx1

83.161

100

0.836
  recA Streptococcus pneumoniae D39

83.161

100

0.836
  recA Streptococcus pneumoniae R6

83.161

100

0.836
  recA Streptococcus mitis NCTC 12261

83.377

100

0.836
  recA Streptococcus mitis SK321

82.812

100

0.828
  recA Lactococcus lactis subsp. cremoris KW2

75.071

91.927

0.69
  recA Latilactobacillus sakei subsp. sakei 23K

67.262

87.5

0.589
  recA Bacillus subtilis subsp. subtilis str. 168

68.693

85.677

0.589
  recA Neisseria gonorrhoeae MS11

61.934

86.198

0.534
  recA Neisseria gonorrhoeae strain FA1090

61.934

86.198

0.534
  recA Neisseria gonorrhoeae MS11

61.934

86.198

0.534
  recA Acinetobacter baylyi ADP1

57.91

92.188

0.534
  recA Acinetobacter baumannii D1279779

62.577

84.896

0.531
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.479

86.979

0.526
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.846

84.635

0.523
  recA Vibrio cholerae strain A1552

61.846

84.635

0.523
  recA Glaesserella parasuis strain SC1401

60.923

84.635

0.516
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

84.115

0.51
  recA Pseudomonas stutzeri DSM 10701

60

84.635

0.508
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.912

86.198

0.508
  recA Helicobacter pylori 26695

58.589

84.896

0.497
  recA Helicobacter pylori strain NCTC11637

58.589

84.896

0.497
  recA Ralstonia pseudosolanacearum GMI1000

60.252

82.552

0.497

Multiple sequence alignment