Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QRY57_RS18555 Genome accession   NZ_CP127376
Coordinates   3302272..3303303 (-) Length   343 a.a.
NCBI ID   WP_026590386.1    Uniprot ID   A0A1H3JGQ8
Organism   Bacillus arachidis strain YX15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3297272..3308303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRY57_RS18535 (QRY57_18540) - 3297958..3298881 (-) 924 WP_286015837.1 dipeptidase -
  QRY57_RS18540 (QRY57_18545) spoVS 3298943..3299203 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  QRY57_RS18545 (QRY57_18550) - 3299352..3300146 (-) 795 WP_003199419.1 TIGR00282 family metallophosphoesterase -
  QRY57_RS18550 (QRY57_18555) rny 3300277..3301839 (-) 1563 WP_026590387.1 ribonuclease Y -
  QRY57_RS18555 (QRY57_18560) recA 3302272..3303303 (-) 1032 WP_026590386.1 recombinase RecA Machinery gene
  QRY57_RS18560 (QRY57_18565) cinA 3303447..3304685 (-) 1239 WP_286015838.1 competence/damage-inducible protein A Machinery gene
  QRY57_RS18565 (QRY57_18570) pgsA 3304706..3305284 (-) 579 WP_001052962.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QRY57_RS18570 (QRY57_18575) - 3305349..3306266 (-) 918 WP_090687059.1 helix-turn-helix domain-containing protein -
  QRY57_RS18575 (QRY57_18580) - 3306288..3307073 (-) 786 WP_286017903.1 DUF3388 domain-containing protein -
  QRY57_RS18580 (QRY57_18585) - 3307215..3307463 (-) 249 WP_026590382.1 DUF3243 domain-containing protein -
  QRY57_RS18585 (QRY57_18590) - 3307543..3308256 (-) 714 WP_286015839.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37333.46 Da        Isoelectric Point: 4.9868

>NTDB_id=843787 QRY57_RS18555 WP_026590386.1 3302272..3303303(-) (recA) [Bacillus arachidis strain YX15]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERRISTVPSGSLALDVALGVGGYPRGRIIEIYGPESSGKTTVSLHAIAE
VQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAIDIIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT
KIKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENAKQFLKENPDVRDEIAFF
IREHHGISEDSAAESMEDGTLLD

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=843787 QRY57_RS18555 WP_026590386.1 3302272..3303303(-) (recA) [Bacillus arachidis strain YX15]
ATGAGTGATCGTCAAGCGGCATTAGATATGGCGTTAAAACAAATAGAGAAGCAATTCGGTAAAGGTTCTATTATGAAATT
AGGAGAACAGGCAGAACGTAGAATTTCTACGGTACCGAGTGGTTCATTAGCACTTGATGTAGCTTTAGGTGTTGGTGGTT
ACCCACGTGGCCGTATTATCGAAATTTACGGACCTGAAAGTTCAGGTAAAACAACAGTTTCCTTACATGCGATTGCAGAA
GTGCAACGTCAAGGTGGACAAGCAGCATTTATTGATGCTGAGCATGCGATGGATCCGGTATATGCACAAAAGTTAGGTGT
TAATATTGATGAGTTACTATTATCACAGCCTGATACAGGAGAACAAGGTTTAGAAATTGCAGAAGCATTAGTACGAAGCG
GTGCAATTGATATCATCGTAATTGACTCTGTAGCGGCTCTTGTACCAAAAGCGGAAATCGAAGGGGAAATGGGTGACTCT
CATGTCGGTTTACAAGCGCGTTTAATGTCACAAGCACTTCGTAAGCTTTCTGGTGCGATTAATAAATCAAAAACAATTGC
AATCTTTATTAACCAAATTCGTGAAAAAGTTGGGGTTATGTTCGGGAACCCAGAAACAACTCCAGGTGGTCGTGCGTTGA
AATTCTATTCAACAGTCCGTCTTGAAGTACGTCGCGCTGAGCAATTAAAGCAAGGTAATGACATTGTTGGTAACAAAACG
AAAATAAAAGTAGTAAAAAATAAAGTGGCACCTCCTTTCCGTGTTGCTGAAGTTGATATTATGTATGGAGAAGGAATTTC
ACGAGAAGGCGAAATTTTAGATATGGCTTCTGAACTTGATATCGTTCAAAAAAGTGGTGCTTGGTATTCTTATAATGAAG
AACGTTTAGGACAAGGACGCGAAAATGCGAAGCAGTTCTTAAAAGAAAATCCAGATGTAAGAGATGAAATTGCATTCTTT
ATTCGTGAGCACCATGGAATTAGTGAAGATTCTGCTGCTGAAAGTATGGAAGATGGAACTCTTCTTGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H3JGQ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

87.879

96.21

0.845
  recA Latilactobacillus sakei subsp. sakei 23K

77.37

95.335

0.738
  recA Streptococcus mitis SK321

68.713

99.708

0.685
  recA Streptococcus mitis NCTC 12261

68.421

99.708

0.682
  recA Streptococcus mutans UA159

68.155

97.959

0.668
  recA Streptococcus pneumoniae D39

69.394

96.21

0.668
  recA Streptococcus pneumoniae Rx1

69.394

96.21

0.668
  recA Streptococcus pneumoniae R6

69.394

96.21

0.668
  recA Streptococcus pneumoniae TIGR4

69.394

96.21

0.668
  recA Streptococcus pyogenes NZ131

69.817

95.627

0.668
  recA Lactococcus lactis subsp. cremoris KW2

68.263

97.376

0.665
  recA Neisseria gonorrhoeae strain FA1090

65.337

95.044

0.621
  recA Neisseria gonorrhoeae MS11

65.337

95.044

0.621
  recA Neisseria gonorrhoeae MS11

65.337

95.044

0.621
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.242

98.834

0.615
  recA Ralstonia pseudosolanacearum GMI1000

66.879

91.545

0.612
  recA Acinetobacter baumannii D1279779

61.31

97.959

0.601
  recA Helicobacter pylori 26695

62.614

95.918

0.601
  recA Helicobacter pylori strain NCTC11637

62.614

95.918

0.601
  recA Vibrio cholerae strain A1552

63.863

93.586

0.598
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.863

93.586

0.598
  recA Glaesserella parasuis strain SC1401

63.95

93.003

0.595
  recA Acinetobacter baylyi ADP1

63.043

93.878

0.592
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.774

95.335

0.589
  recA Pseudomonas stutzeri DSM 10701

62.187

93.294

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.392

92.128

0.566