Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QRY57_RS18560 Genome accession   NZ_CP127376
Coordinates   3303447..3304685 (-) Length   412 a.a.
NCBI ID   WP_286015838.1    Uniprot ID   -
Organism   Bacillus arachidis strain YX15     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3298447..3309685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRY57_RS18540 (QRY57_18545) spoVS 3298943..3299203 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  QRY57_RS18545 (QRY57_18550) - 3299352..3300146 (-) 795 WP_003199419.1 TIGR00282 family metallophosphoesterase -
  QRY57_RS18550 (QRY57_18555) rny 3300277..3301839 (-) 1563 WP_026590387.1 ribonuclease Y -
  QRY57_RS18555 (QRY57_18560) recA 3302272..3303303 (-) 1032 WP_026590386.1 recombinase RecA Machinery gene
  QRY57_RS18560 (QRY57_18565) cinA 3303447..3304685 (-) 1239 WP_286015838.1 competence/damage-inducible protein A Machinery gene
  QRY57_RS18565 (QRY57_18570) pgsA 3304706..3305284 (-) 579 WP_001052962.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QRY57_RS18570 (QRY57_18575) - 3305349..3306266 (-) 918 WP_090687059.1 helix-turn-helix domain-containing protein -
  QRY57_RS18575 (QRY57_18580) - 3306288..3307073 (-) 786 WP_286017903.1 DUF3388 domain-containing protein -
  QRY57_RS18580 (QRY57_18585) - 3307215..3307463 (-) 249 WP_026590382.1 DUF3243 domain-containing protein -
  QRY57_RS18585 (QRY57_18590) - 3307543..3308256 (-) 714 WP_286015839.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45653.12 Da        Isoelectric Point: 5.8788

>NTDB_id=843788 QRY57_RS18560 WP_286015838.1 3303447..3304685(-) (cinA) [Bacillus arachidis strain YX15]
MNAEIIAVGTELLLGQITNTNAKFLSEKLASIGINVYYHTVVGDNNQRLQEAIQIAEKRADILIFTGGLGPTKDDLTKET
IASTLQEELVYDEVALTSISEYFKRTGREFTENNKKQALVLKGSTVFANDHGMAPGMGLAKNEKVYILLPGPPKEMKPMY
TSYVEPFLRNFTTEEHIYSRVLRFFGIGESQLEVKVQDLIDSQTNPTIAPLASDGEVTLRLTAKHRDVKEAEVLIQHVED
LILERVGEFFYGYNQDFLHNKAIDLLKKKGLTLASAESLTGGLFGNQVTENAGVSSVFKGGIICYHNDVKQHILQVPEEV
LQTVGAVSEQCARYLAENVKTLLKTDIGVSFTGVAGPNASENKEPGTVFVGLAIKNEPTVVFSLKLSGSRQQIRERSVKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=843788 QRY57_RS18560 WP_286015838.1 3303447..3304685(-) (cinA) [Bacillus arachidis strain YX15]
ATGAATGCCGAAATTATTGCGGTTGGAACGGAATTGTTACTCGGACAAATTACAAATACAAATGCGAAATTTTTATCTGA
AAAGTTAGCATCCATTGGAATCAATGTGTATTATCATACTGTTGTAGGTGATAATAATCAGCGGTTACAAGAAGCAATTC
AAATTGCTGAGAAGCGTGCGGATATACTTATTTTTACTGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACA
ATTGCTTCAACTTTGCAAGAAGAACTTGTTTATGATGAAGTGGCATTAACGTCAATTAGTGAATATTTTAAACGTACAGG
GCGTGAATTCACAGAAAACAACAAGAAGCAAGCACTTGTTTTAAAAGGATCGACTGTATTTGCAAATGATCATGGTATGG
CTCCGGGTATGGGGTTAGCTAAGAACGAGAAGGTTTATATTCTATTACCAGGCCCACCAAAAGAAATGAAACCGATGTAT
ACAAGTTACGTAGAGCCATTTTTACGTAACTTTACAACTGAAGAGCATATATATTCCCGTGTTCTTCGTTTTTTCGGCAT
TGGAGAATCCCAACTGGAAGTGAAAGTTCAAGATTTAATTGATAGTCAAACGAATCCAACAATTGCTCCGCTAGCTTCGG
ATGGGGAAGTAACGCTGCGTTTGACCGCTAAACATCGTGATGTAAAGGAAGCAGAAGTGCTCATTCAACATGTAGAAGAT
TTGATTTTAGAGCGAGTAGGGGAATTTTTCTACGGTTATAACCAAGATTTTCTTCATAATAAAGCAATTGATTTATTGAA
GAAAAAAGGTTTAACTTTAGCATCTGCGGAAAGTTTAACAGGCGGTCTGTTTGGAAATCAAGTAACAGAAAACGCGGGTG
TATCTTCTGTATTTAAAGGCGGCATAATTTGCTATCATAACGATGTAAAACAACATATTTTACAAGTACCTGAAGAAGTA
TTACAAACAGTTGGTGCTGTAAGCGAACAATGTGCGCGTTATCTTGCTGAAAATGTAAAAACATTATTGAAGACAGATAT
TGGTGTTAGCTTCACTGGAGTGGCAGGACCAAATGCTTCGGAAAATAAAGAACCTGGTACTGTTTTTGTAGGTTTAGCGA
TAAAGAATGAACCAACTGTTGTTTTTTCTCTTAAATTAAGCGGAAGCCGTCAGCAAATTCGAGAACGCTCTGTGAAATAT
GGATTTTATCATTTGTATAAAAAGCTAGAAGAGATTTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Competence-damaged protein (CinA)

(258-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

57.073

99.515

0.568
  cinA Streptococcus mitis SK321

45.585

100

0.464
  cinA Streptococcus mitis NCTC 12261

45.107

100

0.459
  cinA Streptococcus pneumoniae TIGR4

45.107

100

0.459
  cinA Streptococcus pneumoniae Rx1

44.63

100

0.454
  cinA Streptococcus pneumoniae R6

44.63

100

0.454
  cinA Streptococcus pneumoniae D39

44.391

100

0.451
  cinA Streptococcus mutans UA159

45.567

98.544

0.449
  cinA Streptococcus suis isolate S10

40.053

91.505

0.367