Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QQS40_RS03410 Genome accession   NZ_CP127167
Coordinates   676799..677854 (-) Length   351 a.a.
NCBI ID   WP_329506121.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain HP01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 671799..682854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQS40_RS03365 coaA 672111..673046 (-) 936 WP_329506114.1 type I pantothenate kinase -
  QQS40_RS03390 tuf 673748..674932 (+) 1185 WP_049362643.1 elongation factor Tu -
  QQS40_RS03395 - 675090..675908 (+) 819 WP_329506116.1 Cof-type HAD-IIB family hydrolase -
  QQS40_RS03400 crcB 675909..676304 (+) 396 WP_049355704.1 fluoride efflux transporter CrcB -
  QQS40_RS03405 recX 676279..676731 (-) 453 WP_329506119.1 recombination regulator RecX -
  QQS40_RS03410 recA 676799..677854 (-) 1056 WP_329506121.1 recombinase RecA Machinery gene
  QQS40_RS03415 sxy/tfoX 678326..678994 (+) 669 WP_329506123.1 TfoX/Sxy family DNA transformation protein Regulator

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37600.05 Da        Isoelectric Point: 4.9529

>NTDB_id=842314 QQS40_RS03410 WP_329506121.1 676799..677854(-) (recA) [Haemophilus parainfluenzae strain HP01]
MATQEEKQKALAAALGQIEKQFGKGSIMKLGDTQALDVESVSTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSV
IAQAQKVGKTCAFIDAEHALDPIYAAKLGVDVKELLVSQPDNGEQALEICDALVRSGAVDVVIVDSVAALTPKAEIEGEM
GDSHMGLQARLMSQALRKLTGQIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKDGDEVIG
NETRVKVVKNKLAAPFRQVDFQILYGEGISKAGELIELGVKHKLVEKSGAWYAYNGEKIGQGKANAMKWLHENPAKSDEL
EAKLRAELVANPEQALMADIEQSNDDTESDF

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=842314 QQS40_RS03410 WP_329506121.1 676799..677854(-) (recA) [Haemophilus parainfluenzae strain HP01]
ATGGCAACTCAAGAAGAAAAACAAAAAGCGCTCGCTGCAGCACTTGGTCAAATTGAAAAGCAATTCGGTAAGGGCTCAAT
TATGAAATTGGGCGATACTCAAGCCCTTGATGTAGAATCTGTTTCAACAGGTTCTTTAGGTCTTGATGTCGCTCTTGGTA
TTGGTGGGTTACCAATGGGTCGTATTGTTGAAATTTTTGGACCTGAATCTTCTGGTAAAACAACCTTAACTTTATCTGTT
ATCGCTCAAGCACAAAAAGTAGGCAAAACTTGTGCATTTATCGATGCGGAACATGCTCTTGATCCTATTTATGCAGCAAA
ACTTGGTGTTGATGTGAAAGAACTTTTAGTTTCCCAACCCGACAATGGTGAACAAGCACTTGAAATTTGTGATGCCTTAG
TGCGCTCTGGAGCAGTAGATGTCGTTATTGTGGACTCGGTTGCTGCACTTACCCCGAAAGCTGAAATTGAAGGTGAAATG
GGTGATTCACACATGGGTTTACAAGCACGTCTGATGTCTCAAGCACTACGTAAATTAACTGGTCAAATCAAAAATGCAAA
CTGTCTTGTTATCTTCATTAATCAAATTCGTATGAAAATTGGTGTGATGTTTGGTAACCCAGAAACCACAACTGGTGGTA
ACGCGCTAAAATTCTACTCTTCTGTTCGTTTAGATATTCGTCGTACTGGTTCAGTTAAAGATGGAGATGAGGTCATTGGT
AACGAAACTCGTGTTAAAGTAGTTAAAAACAAATTAGCCGCACCTTTCCGCCAAGTAGATTTCCAAATTCTTTATGGAGA
AGGTATCTCTAAAGCAGGCGAATTAATTGAACTTGGTGTTAAACACAAACTTGTTGAGAAATCCGGTGCATGGTATGCAT
ATAACGGTGAAAAAATTGGTCAAGGTAAAGCCAATGCGATGAAGTGGTTACATGAAAATCCTGCGAAATCAGATGAGCTT
GAAGCAAAGCTTCGCGCTGAATTGGTCGCTAATCCTGAACAAGCATTAATGGCTGATATTGAACAATCCAATGATGATAC
AGAAAGCGATTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

76.522

98.291

0.752
  recA Vibrio cholerae O1 biovar El Tor strain E7946

76.522

98.291

0.752
  recA Glaesserella parasuis strain SC1401

76.453

98.006

0.749
  recA Pseudomonas stutzeri DSM 10701

77.846

92.593

0.721
  recA Neisseria gonorrhoeae strain FA1090

74.923

92.023

0.689
  recA Neisseria gonorrhoeae MS11

74.923

92.023

0.689
  recA Neisseria gonorrhoeae MS11

74.923

92.023

0.689
  recA Acinetobacter baylyi ADP1

69.653

98.575

0.687
  recA Ralstonia pseudosolanacearum GMI1000

73.041

90.883

0.664
  recA Acinetobacter baumannii D1279779

71.385

92.593

0.661
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.985

95.442

0.601
  recA Helicobacter pylori 26695

61.471

96.866

0.595
  recA Helicobacter pylori strain NCTC11637

60.882

96.866

0.59
  recA Bacillus subtilis subsp. subtilis str. 168

66.234

87.749

0.581
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.722

90.313

0.575
  recA Streptococcus pneumoniae TIGR4

56.857

99.715

0.567
  recA Streptococcus pneumoniae Rx1

56.857

99.715

0.567
  recA Streptococcus pneumoniae D39

56.857

99.715

0.567
  recA Streptococcus pneumoniae R6

56.857

99.715

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.55

93.162

0.564
  recA Streptococcus mutans UA159

59.633

93.162

0.556
  recA Latilactobacillus sakei subsp. sakei 23K

60.062

92.023

0.553
  recA Streptococcus mitis NCTC 12261

59.327

93.162

0.553
  recA Streptococcus mitis SK321

59.021

93.162

0.55
  recA Streptococcus pyogenes NZ131

58.537

93.447

0.547
  recA Lactococcus lactis subsp. cremoris KW2

58.462

92.593

0.541