Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QQS40_RS03415 Genome accession   NZ_CP127167
Coordinates   678326..678994 (+) Length   222 a.a.
NCBI ID   WP_329506123.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain HP01     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 673326..683994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQS40_RS03390 tuf 673748..674932 (+) 1185 WP_049362643.1 elongation factor Tu -
  QQS40_RS03395 - 675090..675908 (+) 819 WP_329506116.1 Cof-type HAD-IIB family hydrolase -
  QQS40_RS03400 crcB 675909..676304 (+) 396 WP_049355704.1 fluoride efflux transporter CrcB -
  QQS40_RS03405 recX 676279..676731 (-) 453 WP_329506119.1 recombination regulator RecX -
  QQS40_RS03410 recA 676799..677854 (-) 1056 WP_329506121.1 recombinase RecA Machinery gene
  QQS40_RS03415 sxy/tfoX 678326..678994 (+) 669 WP_329506123.1 TfoX/Sxy family DNA transformation protein Regulator

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25463.81 Da        Isoelectric Point: 10.3912

>NTDB_id=842315 QQS40_RS03415 WP_329506123.1 678326..678994(+) (sxy/tfoX) [Haemophilus parainfluenzae strain HP01]
MKILPIPNDNITKVCELLNQLIGDVTSKNLFTGYGLFHKQKDMFAVWVNNKVYLRAKDELSIKLKGLGCKSFTTNELNKR
FVLSDYYALTESILKDNVLMRTLIILSITQIRKEKLDLALSKIGRIRDLPNLSIKYERALNKVGVDNVDTLRKIGAENAI
VRLKKADISASEAFYWRLRGALENRNCEFYTEKEKERGLSKLNEILSANGFRRCKRASKKVS

Nucleotide


Download         Length: 669 bp        

>NTDB_id=842315 QQS40_RS03415 WP_329506123.1 678326..678994(+) (sxy/tfoX) [Haemophilus parainfluenzae strain HP01]
ATGAAAATCCTACCGATACCTAATGATAATATTACCAAAGTATGTGAACTGCTAAATCAACTTATTGGCGATGTGACAAG
TAAAAATCTATTTACAGGATATGGCTTGTTTCATAAACAAAAAGATATGTTTGCTGTTTGGGTAAACAATAAAGTTTACT
TGCGAGCTAAGGATGAGCTTTCAATAAAATTAAAAGGACTTGGATGTAAATCTTTTACAACAAATGAACTCAATAAGCGT
TTTGTATTATCTGATTATTATGCTTTAACCGAAAGTATCTTGAAGGACAACGTTCTAATGAGAACTTTGATTATTCTTTC
AATTACTCAAATAAGGAAGGAAAAACTCGATCTTGCGCTATCTAAGATTGGACGAATCAGGGACTTGCCAAATTTATCGA
TAAAGTATGAACGGGCATTAAACAAAGTAGGGGTTGATAATGTTGATACTTTACGAAAAATTGGTGCTGAAAATGCGATT
GTTCGTTTGAAGAAAGCGGATATTAGTGCAAGTGAAGCTTTTTATTGGCGACTTCGTGGAGCTTTGGAAAATCGTAATTG
TGAGTTTTACACTGAAAAAGAGAAGGAAAGAGGGCTTAGTAAACTTAATGAAATACTCTCCGCAAATGGATTTAGACGTT
GTAAACGAGCATCCAAAAAGGTTAGTTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(125-197)

TfoX N-terminal domain (TfoX_N)

(16-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

57.416

94.144

0.541