Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QNI29_RS10340 Genome accession   NZ_CP126446
Coordinates   2000864..2001901 (+) Length   345 a.a.
NCBI ID   WP_284526986.1    Uniprot ID   -
Organism   Pontibacillus chungwhensis strain HN14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1995864..2006901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNI29_RS10315 (QNI29_10315) - 1996431..1996688 (+) 258 WP_188649856.1 DUF3243 domain-containing protein -
  QNI29_RS10320 (QNI29_10320) - 1996994..1997785 (+) 792 WP_231416407.1 DUF3388 domain-containing protein -
  QNI29_RS10325 (QNI29_10325) - 1997804..1998781 (+) 978 WP_231416408.1 RodZ domain-containing protein -
  QNI29_RS10330 (QNI29_10330) pgsA 1998867..1999445 (+) 579 WP_231416409.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QNI29_RS10335 (QNI29_10335) cinA 1999448..2000698 (+) 1251 WP_231416410.1 competence/damage-inducible protein A Machinery gene
  QNI29_RS10340 (QNI29_10340) recA 2000864..2001901 (+) 1038 WP_284526986.1 recombinase RecA Machinery gene
  QNI29_RS10345 (QNI29_10345) rny 2002260..2003822 (+) 1563 WP_231416411.1 ribonuclease Y -
  QNI29_RS10350 (QNI29_10350) - 2003955..2004752 (+) 798 WP_231416412.1 TIGR00282 family metallophosphoesterase -
  QNI29_RS10355 (QNI29_10355) spoVS 2004861..2005121 (+) 261 WP_036778868.1 stage V sporulation protein SpoVS -
  QNI29_RS10360 (QNI29_10360) - 2005312..2006241 (+) 930 WP_231416413.1 dipeptidase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37700.77 Da        Isoelectric Point: 5.0828

>NTDB_id=837847 QNI29_RS10340 WP_284526986.1 2000864..2001901(+) (recA) [Pontibacillus chungwhensis strain HN14]
MSDRKQALDMALRQIEKQFGKGSIMKLGEQAEMKINTVPSGSLALDVALGVGGYPRGRIVEVYGPESSGKTTVALHAIAE
AQRQGGQAAFIDAEHALDPVYARALGVDIENLLLSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLGGAINKSKTTAMFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNEMVGNKT
KIKVVKNKVAPPFRQAEVDIMYGEGISKEGELIDIGTDLDIITKSGSWYSYNDERMGQGRENAKAYLKENPDRYNEINTK
IRQHYDMYDDPEGAEETKNQDTLDV

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=837847 QNI29_RS10340 WP_284526986.1 2000864..2001901(+) (recA) [Pontibacillus chungwhensis strain HN14]
GTGAGCGATCGTAAACAAGCGTTAGATATGGCTCTTCGTCAAATAGAAAAACAATTCGGTAAGGGTTCCATTATGAAATT
GGGCGAACAAGCCGAAATGAAAATAAATACAGTACCAAGTGGTTCTCTAGCACTGGATGTGGCTCTTGGGGTAGGTGGCT
ATCCTCGCGGCCGTATTGTAGAAGTGTATGGACCAGAATCCTCTGGTAAAACAACAGTAGCCCTTCATGCCATAGCTGAG
GCACAGCGTCAAGGTGGACAAGCTGCTTTCATCGACGCTGAACATGCGCTTGATCCGGTTTATGCACGTGCCTTAGGTGT
CGATATCGAGAATCTGTTGCTATCTCAACCTGACACCGGGGAACAAGCACTTGAAATTGCGGAAGCACTAGTTCGAAGTG
GAGCAATTGATATCATCGTTATTGACTCAGTAGCAGCCTTAGTTCCTAAAGCTGAAATTGAAGGCGAAATGGGAGACTCT
CACGTAGGTCTTCAAGCTCGTCTTATGTCCCAAGCTCTTCGTAAACTTGGCGGTGCGATTAACAAGTCGAAAACAACAGC
TATGTTTATTAACCAAATCCGTGAGAAAGTAGGGGTTATGTTTGGTAACCCTGAAACAACTCCAGGTGGTCGTGCTCTTA
AGTTCTATTCATCAGTACGATTAGAGGTGCGCCGAGCTGAAACGTTGAAACAAGGAAATGAAATGGTCGGAAACAAAACG
AAGATTAAAGTCGTGAAGAACAAAGTAGCTCCTCCGTTCAGGCAAGCTGAAGTAGATATCATGTATGGTGAAGGAATTTC
TAAGGAAGGCGAGCTTATCGATATTGGTACTGATCTTGATATAATTACTAAAAGTGGTTCATGGTATTCTTATAACGATG
AACGAATGGGTCAAGGTCGTGAAAATGCAAAAGCTTACCTAAAAGAAAATCCAGACCGTTATAATGAAATTAACACTAAG
ATTCGTCAGCACTATGATATGTATGATGATCCAGAAGGTGCTGAAGAAACCAAAAATCAAGATACGCTAGATGTGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

84.404

94.783

0.8
  recA Latilactobacillus sakei subsp. sakei 23K

73.636

95.652

0.704
  recA Streptococcus pneumoniae D39

67.536

100

0.675
  recA Streptococcus pneumoniae Rx1

67.536

100

0.675
  recA Streptococcus pneumoniae R6

67.536

100

0.675
  recA Streptococcus pneumoniae TIGR4

67.536

100

0.675
  recA Streptococcus mitis NCTC 12261

67.638

99.42

0.672
  recA Streptococcus mitis SK321

67.638

99.42

0.672
  recA Streptococcus mutans UA159

65.607

100

0.658
  recA Lactococcus lactis subsp. cremoris KW2

67.062

97.681

0.655
  recA Streptococcus pyogenes NZ131

67.89

94.783

0.643
  recA Neisseria gonorrhoeae strain FA1090

68.536

93.043

0.638
  recA Neisseria gonorrhoeae MS11

68.536

93.043

0.638
  recA Neisseria gonorrhoeae MS11

68.536

93.043

0.638
  recA Ralstonia pseudosolanacearum GMI1000

65.625

92.754

0.609
  recA Vibrio cholerae strain A1552

63.333

95.652

0.606
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.333

95.652

0.606
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.882

98.551

0.6
  recA Helicobacter pylori 26695

63.975

93.333

0.597
  recA Helicobacter pylori strain NCTC11637

63.975

93.333

0.597
  recA Acinetobacter baylyi ADP1

63.077

94.203

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.691

94.783

0.594
  recA Glaesserella parasuis strain SC1401

64.263

92.464

0.594
  recA Pseudomonas stutzeri DSM 10701

62.813

92.754

0.583
  recA Acinetobacter baumannii D1279779

62.112

93.333

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.5

92.754

0.58