Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QNI29_RS10335 Genome accession   NZ_CP126446
Coordinates   1999448..2000698 (+) Length   416 a.a.
NCBI ID   WP_231416410.1    Uniprot ID   -
Organism   Pontibacillus chungwhensis strain HN14     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1994448..2005698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNI29_RS10310 (QNI29_10310) - 1995628..1996347 (+) 720 WP_231416406.1 SDR family oxidoreductase -
  QNI29_RS10315 (QNI29_10315) - 1996431..1996688 (+) 258 WP_188649856.1 DUF3243 domain-containing protein -
  QNI29_RS10320 (QNI29_10320) - 1996994..1997785 (+) 792 WP_231416407.1 DUF3388 domain-containing protein -
  QNI29_RS10325 (QNI29_10325) - 1997804..1998781 (+) 978 WP_231416408.1 RodZ domain-containing protein -
  QNI29_RS10330 (QNI29_10330) pgsA 1998867..1999445 (+) 579 WP_231416409.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QNI29_RS10335 (QNI29_10335) cinA 1999448..2000698 (+) 1251 WP_231416410.1 competence/damage-inducible protein A Machinery gene
  QNI29_RS10340 (QNI29_10340) recA 2000864..2001901 (+) 1038 WP_284526986.1 recombinase RecA Machinery gene
  QNI29_RS10345 (QNI29_10345) rny 2002260..2003822 (+) 1563 WP_231416411.1 ribonuclease Y -
  QNI29_RS10350 (QNI29_10350) - 2003955..2004752 (+) 798 WP_231416412.1 TIGR00282 family metallophosphoesterase -
  QNI29_RS10355 (QNI29_10355) spoVS 2004861..2005121 (+) 261 WP_036778868.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45523.53 Da        Isoelectric Point: 4.5793

>NTDB_id=837846 QNI29_RS10335 WP_231416410.1 1999448..2000698(+) (cinA) [Pontibacillus chungwhensis strain HN14]
MTQLVKGEIIAVGTELLLGQIVNSNAQWVSQELANRGVGVFYHTVVGDNLNRLQSQFKESAERSDLVIITGGLGPTDDDL
TREAAAKVMGKEIVQDDEALASIESYYARNNQQMTPNNKRQARIIEGGVLLSNRVGMAPGFAVQDGDTLWVFLPGVPREM
KAILQDDGFKYIEKHFSINQTIKSRMLRFIGIGESQLEHDLKDLIDGQTNPTIAPLASAGEVGLRLTARADDEQVAVSLI
EKAEREIKERVGEYFYGTDDDSIQSKVMELLKENNLSISAAESLTGGRFVDNIVSFEGASSICKGGIVAYSNEAKENVLD
IPSLVLEEYGAVSEACALSMAVNITEKLRSDIGISFTGVAGPTASEGKEVGTVYIGIYVDDNQPIVKCFHFNGDRDMIRH
RSVKKGFELLYYLLKS

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=837846 QNI29_RS10335 WP_231416410.1 1999448..2000698(+) (cinA) [Pontibacillus chungwhensis strain HN14]
ATGACACAACTCGTAAAAGGTGAGATTATTGCAGTTGGAACAGAGTTGCTTTTGGGTCAAATTGTAAATTCCAATGCTCA
ATGGGTTTCTCAAGAATTAGCAAACAGAGGGGTTGGAGTATTTTATCATACAGTTGTAGGAGATAATTTGAACAGGCTCC
AATCTCAGTTTAAAGAGTCGGCAGAACGTTCTGATCTTGTTATCATTACGGGAGGATTAGGCCCTACTGATGATGATCTA
ACTCGCGAAGCAGCCGCTAAAGTCATGGGAAAAGAAATTGTGCAGGATGATGAAGCATTAGCTTCAATCGAATCTTACTA
TGCTCGAAATAATCAGCAAATGACGCCGAATAATAAGCGTCAGGCGCGTATTATCGAAGGTGGGGTTCTTCTAAGTAATC
GTGTAGGTATGGCGCCAGGCTTCGCCGTTCAAGATGGTGATACATTATGGGTGTTTCTCCCGGGCGTGCCCCGAGAAATG
AAAGCGATCCTACAAGATGATGGATTTAAGTATATAGAGAAGCATTTTTCCATTAATCAAACCATCAAATCTCGCATGTT
ACGTTTTATCGGAATTGGAGAATCTCAGCTCGAACATGATTTAAAAGACTTAATAGATGGACAAACCAACCCTACAATCG
CCCCTTTAGCCAGTGCTGGAGAGGTAGGACTTCGTCTTACAGCGAGAGCAGATGACGAGCAAGTTGCAGTATCTCTTATT
GAAAAAGCTGAACGAGAAATTAAAGAACGCGTCGGCGAGTACTTTTATGGAACAGATGATGACAGTATTCAAAGCAAAGT
TATGGAGTTACTTAAAGAAAATAATTTATCAATAAGTGCTGCTGAGAGTTTAACTGGTGGTCGATTCGTTGATAATATCG
TTTCATTTGAAGGGGCTTCTTCCATATGTAAGGGTGGAATTGTGGCCTATTCCAATGAAGCGAAAGAAAATGTATTAGAT
ATCCCAAGCCTTGTTCTAGAAGAATACGGGGCAGTATCGGAAGCGTGCGCCTTGTCTATGGCTGTAAATATTACAGAAAA
ACTTCGTTCTGATATCGGGATTAGTTTTACAGGTGTAGCTGGTCCAACAGCTTCAGAAGGGAAAGAAGTCGGAACGGTTT
ATATTGGTATTTATGTTGATGACAACCAACCGATTGTTAAATGTTTTCACTTTAATGGTGATCGTGATATGATAAGACAC
CGTAGTGTGAAAAAAGGATTTGAACTTTTATATTATTTATTAAAATCGTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-165)

Competence-damaged protein (CinA)

(261-412)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

49.512

98.558

0.488
  cinA Streptococcus mitis SK321

44.656

100

0.452
  cinA Streptococcus pneumoniae TIGR4

43.943

100

0.445
  cinA Streptococcus mitis NCTC 12261

43.943

100

0.445
  cinA Streptococcus pneumoniae Rx1

43.705

100

0.442
  cinA Streptococcus pneumoniae R6

43.705

100

0.442
  cinA Streptococcus pneumoniae D39

43.468

100

0.44
  cinA Streptococcus mutans UA159

42.308

100

0.423