Detailed information NTG0083733

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: VA249_RS11875
• Genome accession: NZ_AP024165
• Coordinates: 2594024..2595064 (-)
• Length: 346 a.a.
• NCBI ID: WP_221068109.1
• Uniprot ID: -
• Organism: Vibrio alfacsensis strain 04Ya108
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2589024..2600064

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VA249_RS11860 (VYA_22480)	-	2589222..2590409 (-)	1188	WP_221068106.1	aspartate kinase	-
VA249_RS11865 (VYA_22490)	alaS	2590609..2593206 (-)	2598	WP_221068107.1	alanine--tRNA ligase	-
VA249_RS11870 (VYA_22500)	recX	2593349..2593816 (-)	468	WP_221068108.1	recombination regulator RecX	-
VA249_RS11875 (VYA_22510)	recA	2594024..2595064 (-)	1041	WP_221068109.1	recombinase RecA	Machinery gene
VA249_RS11880 (VYA_22520)	pncC	2595265..2595747 (-)	483	WP_221068110.1	nicotinamide-nucleotide amidase	-
VA249_RS11885 (VYA_22530)	mutS	2595832..2598393 (+)	2562	WP_221068111.1	DNA mismatch repair protein MutS	-
VA249_RS11890 (VYA_22540)	rpoS	2598503..2599489 (-)	987	WP_221068112.1	RNA polymerase sigma factor RpoS	Regulator

Sequence

Protein

• Length: 346 a.a.
• Molecular weight: 37403.82 Da
• Isoelectric Point: 4.9668

>NTDB_id=83733 VA249_RS11875 WP_221068109.1 2594024..2595064(-) (recA) [Vibrio alfacsensis strain 04Ya108]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRTMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYNGDKIGQGKANACNYLRENPEIAKTIDT
KLREMLLSPALPDAPESDEKSEQEEF

Nucleotide

• Length: 1041 bp

>NTDB_id=83733 VA249_RS11875 WP_221068109.1 2594024..2595064(-) (recA) [Vibrio alfacsensis strain 04Ya108]
ATGGACGAGAACAAACAGAAAGCGCTCGCCGCTGCGCTAGGTCAAATTGAAAAGCAATTCGGTAAAGGCTCTATCATGCG
TCTTGGCGACAACCGCACAATGGACGTAGAAACCATTTCAACGGGTTCTCTTTCTCTTGATATCGCTTTGGGTGCTGGTG
GCCTGCCAATGGGTCGTATCGTAGAAATCTACGGTCCAGAATCTTCAGGTAAAACAACATTAACACTAGAGCTTATTGCC
GCCGCGCAACGTGAAGGTAAAACTTGTGCGTTTATCGATGCAGAGCACGCGCTAGACCCGGTATACGCGAAGAAGCTTGG
TGTTGATATCGACGCACTGTTAGTTTCTCAGCCAGATACGGGTGAGCAAGCTCTAGAGATCTGTGACGCACTGGCACGTT
CTGGTGCTATCGACGTTATGGTTGTCGATTCAGTAGCCGCACTGACACCAAAAGCAGAAATTGAAGGTGAAATGGGCGAT
AGCCACATGGGCCTTCAAGCTCGTATGCTTTCTCAAGCAATGCGTAAGCTAACGGGTAACCTAAAACAGTCTAACTGTAT
GTGTATCTTCATCAACCAGATTCGTATGAAGATTGGTGTGATGTTCGGTAACCCAGAGACAACTACAGGTGGTAACGCAC
TTAAGTTCTACGCTTCTGTTCGCCTAGATATTCGCCGTACTGGTGCAATCAAAGAAGGTGATGAGGTTGTTGGTAACGAA
ACTCGCATCAAAGTGGTTAAGAACAAGATTGCTGCCCCGTTTAAAGAAGCAAACACGCAAATCATGTACGGTCAGGGTTT
CAACCGCGAAGGTGAATTGATCGACCTAGGCGTGAAGCACAAGCTAGTTGAAAAAGCAGGTGCTTGGTACAGTTACAATG
GCGATAAGATTGGTCAAGGTAAAGCGAACGCTTGTAACTACCTACGCGAAAACCCTGAGATTGCTAAGACTATCGATACC
AAACTTCGTGAAATGTTGCTTTCTCCGGCACTCCCTGATGCGCCAGAATCAGATGAAAAATCAGAGCAAGAAGAGTTTTA
A

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (7-267)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Vibrio cholerae O1 biovar El Tor strain E7946	95.745	95.087	0.91
recA	Vibrio cholerae strain A1552	95.745	95.087	0.91
recA	Acinetobacter baylyi ADP1	71.965	100	0.72
recA	Acinetobacter baumannii D1279779	72.515	98.844	0.717
recA	Pseudomonas stutzeri DSM 10701	75.535	94.509	0.714
recA	Glaesserella parasuis strain SC1401	68.286	100	0.691
recA	Neisseria gonorrhoeae MS11	69.018	94.22	0.65
recA	Neisseria gonorrhoeae MS11	69.018	94.22	0.65
recA	Neisseria gonorrhoeae strain FA1090	69.018	94.22	0.65
recA	Ralstonia pseudosolanacearum GMI1000	71.704	89.884	0.645
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	60.641	99.133	0.601
recA	Helicobacter pylori strain NCTC11637	61.176	98.266	0.601
recA	Helicobacter pylori 26695	60.882	98.266	0.598
recA	Streptococcus mitis SK321	59.593	99.422	0.592
recA	Streptococcus pneumoniae R6	62.539	93.353	0.584
recA	Streptococcus pneumoniae TIGR4	62.539	93.353	0.584
recA	Streptococcus pneumoniae Rx1	62.539	93.353	0.584
recA	Streptococcus pneumoniae D39	62.539	93.353	0.584
recA	Bacillus subtilis subsp. subtilis str. 168	62.928	92.775	0.584
recA	Streptococcus mitis NCTC 12261	62.229	93.353	0.581
recA	Streptococcus mutans UA159	61.231	93.931	0.575
recA	Latilactobacillus sakei subsp. sakei 23K	58.017	99.133	0.575
recA	Streptococcus pyogenes NZ131	60.923	93.931	0.572
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	59.517	95.665	0.569
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	61.371	92.775	0.569
recA	Lactococcus lactis subsp. cremoris KW2	60.372	93.353	0.564