Detailed information NTG0083735

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: VA249_RS11890
• Genome accession: NZ_AP024165
• Coordinates: 2598503..2599489 (-)
• Length: 328 a.a.
• NCBI ID: WP_221068112.1
• Uniprot ID: -
• Organism: Vibrio alfacsensis strain 04Ya108
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2593503..2604489

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VA249_RS11875 (VYA_22510)	recA	2594024..2595064 (-)	1041	WP_221068109.1	recombinase RecA	Machinery gene
VA249_RS11880 (VYA_22520)	pncC	2595265..2595747 (-)	483	WP_221068110.1	nicotinamide-nucleotide amidase	-
VA249_RS11885 (VYA_22530)	mutS	2595832..2598393 (+)	2562	WP_221068111.1	DNA mismatch repair protein MutS	-
VA249_RS11890 (VYA_22540)	rpoS	2598503..2599489 (-)	987	WP_221068112.1	RNA polymerase sigma factor RpoS	Regulator
VA249_RS11895 (VYA_22550)	-	2599570..2600493 (-)	924	WP_221068113.1	peptidoglycan DD-metalloendopeptidase family protein	-
VA249_RS11900 (VYA_22560)	-	2600508..2601134 (-)	627	WP_221068114.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
VA249_RS11905 (VYA_22570)	surE	2601134..2601910 (-)	777	WP_221068115.1	5'/3'-nucleotidase SurE	-
VA249_RS11910 (VYA_22580)	truD	2601910..2602953 (-)	1044	WP_221068116.1	tRNA pseudouridine(13) synthase TruD	-
VA249_RS11915 (VYA_22590)	ispF	2603000..2603476 (-)	477	WP_025622860.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
VA249_RS11920 (VYA_22600)	ispD	2603491..2604198 (-)	708	WP_221068117.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
VA249_RS11925 (VYA_22610)	ftsB	2604203..2604481 (-)	279	WP_128810181.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37447.49 Da
• Isoelectric Point: 4.8368

>NTDB_id=83735 VA249_RS11890 WP_221068112.1 2598503..2599489(-) (rpoS) [Vibrio alfacsensis strain 04Ya108]
MSISNTVTKVEEFGYDKTAVQSTASELEKTPSKETKTVVREELDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMNESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDVSNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=83735 VA249_RS11890 WP_221068112.1 2598503..2599489(-) (rpoS) [Vibrio alfacsensis strain 04Ya108]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGGTTATGACAAAACGGCAGTGCAAAGCACAGCAAGCGAACT
TGAAAAAACTCCGTCTAAAGAAACTAAAACGGTTGTACGCGAAGAGCTTGACGCGAGCAACAAAAGCCTAGATGCCACAC
AGCTGTATCTTGGCGAGATAGGTTTCTCTCCGCTACTTACTGCAGAAGAAGAAGTACTCTATGCTCGTCGCGCGCTTCGA
GGCGATGAAGCTGCGCGCAAACGAATGAACGAGAGTAACTTGCGTCTTGTGGTTAAAATTTCTCGTCGATATAGCAATCG
TGGTTTAGCGCTGCTCGATCTTATTGAAGAAGGTAATCTTGGTTTGATCCGTGCGGTAGAGAAGTTTGACCCAGAGCGCG
GGTTTCGTTTTTCTACTTATGCGACATGGTGGATCCGTCAAACTATCGAACGCGCATTGATGAACCAAACTCGCACGATT
CGCCTACCAATTCATGTTGTGAAAGAGCTAAACATTTATCTGCGCACCGCGCGCGAACTCTCTCAAAAGCTCGATCATGA
ACCAACGGCAGAAGAAATTGCCGCACAGTTGGATATCCCTGTTGAAGATGTCAGTAAGATGCTGCGTCTGAACGAACGTA
TTAGTTCGGTTGATACACCGATTGGTGGGGATGGAGAAAAGGCTCTCCTCGACATTATCCCAGATGTAAGCAACTCTGAT
CCGGAAGTATCAACGCAAGATGATGACATTAAGTCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGA
AGTGCTAGCACGTCGTTTTGGTCTGCTTGGCTATGAGCCATCAACACTTGAAGAAGTGGGACGTGAGATTGGTTTAACGC
GTGAGCGTGTTCGTCAGATACAAGTTGAAGGTTTGCGTCGATTACGCGAGATTTTGATCAAACAAGGTCTGAATATGGAA
AACCTATTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 2 (Sigma70_r2) (91-158)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854