Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QLQ22_RS11395 Genome accession   NZ_CP126116
Coordinates   2291636..2292673 (+) Length   345 a.a.
NCBI ID   WP_223442494.1    Uniprot ID   -
Organism   Metabacillus sp. CT-WN-B3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2286636..2297673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ22_RS11370 (QLQ22_11370) - 2287259..2287516 (+) 258 WP_223442477.1 DUF3243 domain-containing protein -
  QLQ22_RS11375 (QLQ22_11375) - 2287772..2288563 (+) 792 WP_223442480.1 DUF3388 domain-containing protein -
  QLQ22_RS11380 (QLQ22_11380) - 2288582..2289475 (+) 894 WP_284016643.1 RodZ domain-containing protein -
  QLQ22_RS11385 (QLQ22_11385) pgsA 2289549..2290127 (+) 579 WP_223442486.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QLQ22_RS11390 (QLQ22_11390) cinA 2290153..2291409 (+) 1257 WP_252208634.1 competence/damage-inducible protein A Machinery gene
  QLQ22_RS11395 (QLQ22_11395) recA 2291636..2292673 (+) 1038 WP_223442494.1 recombinase RecA Machinery gene
  QLQ22_RS11400 (QLQ22_11400) rny 2293044..2294606 (+) 1563 WP_223442497.1 ribonuclease Y -
  QLQ22_RS11405 (QLQ22_11405) - 2294699..2295493 (+) 795 WP_223442502.1 TIGR00282 family metallophosphoesterase -
  QLQ22_RS11410 (QLQ22_11410) spoVS 2295693..2295953 (+) 261 WP_029281188.1 stage V sporulation protein SpoVS -
  QLQ22_RS11415 (QLQ22_11415) - 2296210..2297127 (+) 918 WP_284016644.1 dipeptidase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37341.61 Da        Isoelectric Point: 5.0797

>NTDB_id=836698 QLQ22_RS11395 WP_223442494.1 2291636..2292673(+) (recA) [Metabacillus sp. CT-WN-B3]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTDRKISTSPSGSLALDTALGVGGYPRGRIIEIYGPESSGKTTVALHAIAE
VQQKGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILVIDSVAALVPKAEIEGEMGDA
HVGLQARLMSQALRKLSGAISKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNEMVGNKT
KIKVVKNKVAPPFRVAEVDIMYGEGISKEGEIIDLGTDIDIVQKSGSWYSYNEERLGQGRENAKIFLKENPSIRLEIQGK
IRSHYGLDEVAVAPDGQEELDLLED

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=836698 QLQ22_RS11395 WP_223442494.1 2291636..2292673(+) (recA) [Metabacillus sp. CT-WN-B3]
GTGAGCGATCGTCAAGCTGCCTTAGATATGGCACTGAAACAAATAGAAAAGCAATTTGGTAAAGGTTCAATTATGAAACT
CGGTGAACAGACTGACCGGAAGATCTCTACATCTCCAAGCGGTTCACTTGCACTTGATACAGCACTTGGTGTTGGCGGAT
ATCCGCGTGGAAGAATTATAGAAATATATGGACCTGAGAGCTCAGGTAAAACGACAGTTGCCCTTCATGCGATAGCAGAA
GTACAGCAAAAGGGAGGACAGGCTGCGTTTATAGATGCAGAACATGCCCTTGACCCTGTATATGCTCAAAAGCTTGGTGT
AAATATAGATGAACTTCTTCTCTCACAGCCGGATACAGGAGAGCAGGCGCTTGAAATTGCTGAAGCGCTGGTTCGAAGCG
GAGCGGTAGATATTCTAGTCATTGACTCGGTAGCAGCTTTAGTTCCAAAAGCTGAAATTGAAGGTGAAATGGGAGATGCT
CACGTAGGCTTGCAGGCTCGTCTTATGTCTCAGGCATTGCGTAAATTATCCGGAGCAATCAGCAAATCAAAAACAATTGC
TATTTTCATTAACCAGATCCGTGAAAAAGTAGGAGTTATGTTCGGTAATCCTGAAACAACTCCAGGCGGACGCGCTCTGA
AGTTTTATTCTTCGGTGCGTTTAGAGGTTCGCCGTGCTGAAACGCTGAAACAGGGCAATGAGATGGTCGGCAATAAAACC
AAAATCAAAGTTGTCAAAAACAAAGTTGCACCTCCTTTCCGTGTTGCAGAAGTTGACATTATGTACGGGGAAGGCATCTC
TAAAGAAGGCGAAATCATTGATCTAGGAACAGATATTGATATTGTTCAAAAGAGCGGTTCATGGTATTCGTACAATGAGG
AGCGTTTAGGACAGGGAAGAGAAAACGCAAAAATCTTCCTAAAGGAGAATCCTAGCATCCGCTTAGAGATTCAGGGGAAA
ATCCGCAGCCACTACGGCTTGGATGAAGTTGCAGTTGCTCCAGATGGACAAGAAGAATTAGATTTACTGGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

90.361

96.232

0.87
  recA Latilactobacillus sakei subsp. sakei 23K

73.469

99.42

0.73
  recA Streptococcus mitis SK321

65.169

100

0.672
  recA Streptococcus pneumoniae TIGR4

68.788

95.652

0.658
  recA Streptococcus pneumoniae Rx1

68.788

95.652

0.658
  recA Streptococcus pneumoniae D39

68.788

95.652

0.658
  recA Streptococcus pneumoniae R6

68.788

95.652

0.658
  recA Streptococcus mitis NCTC 12261

68.485

95.652

0.655
  recA Streptococcus mutans UA159

68.278

95.942

0.655
  recA Streptococcus pyogenes NZ131

68.293

95.072

0.649
  recA Lactococcus lactis subsp. cremoris KW2

66.667

95.652

0.638
  recA Neisseria gonorrhoeae MS11

64.412

98.551

0.635
  recA Neisseria gonorrhoeae strain FA1090

64.412

98.551

0.635
  recA Neisseria gonorrhoeae MS11

64.412

98.551

0.635
  recA Ralstonia pseudosolanacearum GMI1000

68.051

90.725

0.617
  recA Helicobacter pylori 26695

61.808

99.42

0.614
  recA Helicobacter pylori strain NCTC11637

61.808

99.42

0.614
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.417

94.493

0.609
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.22

94.783

0.609
  recA Acinetobacter baylyi ADP1

60.58

100

0.606
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.312

92.754

0.606
  recA Vibrio cholerae strain A1552

65.312

92.754

0.606
  recA Glaesserella parasuis strain SC1401

60.29

100

0.603
  recA Acinetobacter baumannii D1279779

60.641

99.42

0.603
  recA Pseudomonas stutzeri DSM 10701

63.863

93.043

0.594
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.25

92.754

0.568