Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QLQ22_RS11390 Genome accession   NZ_CP126116
Coordinates   2290153..2291409 (+) Length   418 a.a.
NCBI ID   WP_252208634.1    Uniprot ID   -
Organism   Metabacillus sp. CT-WN-B3     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2285153..2296409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ22_RS11365 (QLQ22_11365) - 2286462..2287178 (+) 717 WP_284016642.1 SDR family oxidoreductase -
  QLQ22_RS11370 (QLQ22_11370) - 2287259..2287516 (+) 258 WP_223442477.1 DUF3243 domain-containing protein -
  QLQ22_RS11375 (QLQ22_11375) - 2287772..2288563 (+) 792 WP_223442480.1 DUF3388 domain-containing protein -
  QLQ22_RS11380 (QLQ22_11380) - 2288582..2289475 (+) 894 WP_284016643.1 RodZ domain-containing protein -
  QLQ22_RS11385 (QLQ22_11385) pgsA 2289549..2290127 (+) 579 WP_223442486.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QLQ22_RS11390 (QLQ22_11390) cinA 2290153..2291409 (+) 1257 WP_252208634.1 competence/damage-inducible protein A Machinery gene
  QLQ22_RS11395 (QLQ22_11395) recA 2291636..2292673 (+) 1038 WP_223442494.1 recombinase RecA Machinery gene
  QLQ22_RS11400 (QLQ22_11400) rny 2293044..2294606 (+) 1563 WP_223442497.1 ribonuclease Y -
  QLQ22_RS11405 (QLQ22_11405) - 2294699..2295493 (+) 795 WP_223442502.1 TIGR00282 family metallophosphoesterase -
  QLQ22_RS11410 (QLQ22_11410) spoVS 2295693..2295953 (+) 261 WP_029281188.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 46256.80 Da        Isoelectric Point: 5.3773

>NTDB_id=836697 QLQ22_RS11390 WP_252208634.1 2290153..2291409(+) (cinA) [Metabacillus sp. CT-WN-B3]
MTSKTEIIAVGSELLLGQIVNSNAQFLSQQLAENGLNVYYHTVVGDNPSRLEQAVKIAKERSNIIIFTGGLGPTKDDLTK
ETIANILGKKLVTDEEALRSIEDYFVKVKRSMSENNKKQALVIEDSHVLKNEQGMAPGMAIDADERIYMLLPGPPSEMKP
MFMKFGLPYFREKLGQNDKIISRVLRYFGIGESQLETDIQDLIDAQTNPTIAPLAGDGEVTLRLTARHQNESEAVRLINE
MEKTINSRVGTFFYGYDQTTLADELLRHLRQRDMTISAAESLTGGLFSDQLTAVKGTSDVFKGTIVCYTNEVKQSILNVS
EETLDQHGAVSEQCAKEMAEQIRKLANSDIGISFTGIAGEDPVEGKKPGTVYIGLAFKDQPVRTVLLHLAGSRNGIRRRT
VKYGCYLIIKALMENTAE

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=836697 QLQ22_RS11390 WP_252208634.1 2290153..2291409(+) (cinA) [Metabacillus sp. CT-WN-B3]
ATGACGTCAAAAACAGAAATTATTGCAGTAGGTTCTGAATTGCTTCTTGGGCAAATCGTTAACTCTAATGCCCAGTTTTT
ATCTCAGCAGCTGGCTGAAAATGGTCTTAATGTCTATTATCACACGGTTGTAGGTGATAATCCTTCAAGGCTTGAGCAGG
CAGTAAAGATTGCCAAAGAGCGTTCGAACATTATCATTTTCACAGGCGGCCTTGGACCTACTAAAGATGATCTAACTAAA
GAAACAATCGCAAATATTCTGGGCAAGAAGCTTGTGACTGATGAAGAAGCCCTTCGCAGCATTGAAGACTATTTTGTCAA
AGTAAAAAGAAGCATGTCTGAAAATAATAAAAAACAAGCTCTGGTCATTGAGGATTCTCACGTCTTAAAAAATGAGCAGG
GAATGGCGCCTGGAATGGCAATAGATGCGGATGAGCGAATTTATATGCTGCTTCCTGGCCCGCCCAGCGAAATGAAACCT
ATGTTTATGAAATTCGGGCTCCCATACTTTAGAGAGAAGCTTGGCCAGAATGACAAAATCATTTCGAGGGTTCTTCGATA
CTTTGGCATAGGCGAATCGCAGCTTGAGACAGATATTCAGGATTTGATCGATGCCCAAACCAATCCAACGATTGCACCTC
TTGCGGGTGACGGGGAAGTAACGCTCAGATTGACTGCGCGCCATCAAAATGAATCTGAAGCTGTCCGCCTGATTAATGAA
ATGGAGAAAACAATAAACAGCAGAGTGGGGACTTTTTTCTACGGTTATGACCAGACAACTCTCGCTGATGAATTACTCAG
ACATCTCAGACAAAGAGACATGACAATTTCAGCTGCAGAGAGTTTAACCGGAGGCCTTTTTTCAGATCAGCTGACAGCAG
TTAAAGGAACATCTGATGTTTTTAAAGGTACAATTGTCTGCTACACTAATGAAGTAAAGCAATCCATACTAAACGTATCT
GAAGAAACACTTGATCAGCATGGGGCTGTCAGTGAACAATGTGCCAAAGAAATGGCTGAACAAATCAGGAAGCTTGCAAA
TAGTGATATCGGAATCAGCTTTACCGGCATCGCAGGGGAAGATCCTGTTGAAGGGAAAAAACCTGGAACCGTCTATATCG
GGCTGGCATTTAAAGATCAGCCGGTAAGAACCGTTCTCCTTCATCTTGCAGGCAGCCGCAACGGCATTCGCAGACGTACA
GTGAAATACGGCTGTTACTTGATTATTAAAGCATTAATGGAAAATACAGCAGAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(7-170)

Damage-inducible protein CinA KH domain (CinA_KH)

(182-255)

Competence-damaged protein (CinA)

(259-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

62.836

97.847

0.615
  cinA Streptococcus pneumoniae TIGR4

45.972

100

0.464
  cinA Streptococcus pneumoniae Rx1

45.498

100

0.459
  cinA Streptococcus pneumoniae R6

45.498

100

0.459
  cinA Streptococcus mitis SK321

45.261

100

0.457
  cinA Streptococcus pneumoniae D39

45.261

100

0.457
  cinA Streptococcus mitis NCTC 12261

45.261

100

0.457
  cinA Streptococcus mutans UA159

44.952

99.522

0.447