Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QNH48_RS09720 Genome accession   NZ_CP126115
Coordinates   1973548..1974588 (+) Length   346 a.a.
NCBI ID   WP_095249337.1    Uniprot ID   -
Organism   Neobacillus sp. YX16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1968548..1979588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH48_RS09695 (QNH48_09695) - 1968972..1969229 (+) 258 WP_283954705.1 DUF3243 domain-containing protein -
  QNH48_RS09700 (QNH48_09700) - 1969388..1970179 (+) 792 WP_095249343.1 DUF3388 domain-containing protein -
  QNH48_RS09705 (QNH48_09705) - 1970201..1971106 (+) 906 WP_283954706.1 RodZ domain-containing protein -
  QNH48_RS09710 (QNH48_09710) pgsA 1971157..1971735 (+) 579 WP_095249339.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QNH48_RS09715 (QNH48_09715) cinA 1971754..1973007 (+) 1254 WP_283955729.1 competence/damage-inducible protein A Machinery gene
  QNH48_RS09720 (QNH48_09720) recA 1973548..1974588 (+) 1041 WP_095249337.1 recombinase RecA Machinery gene
  QNH48_RS09725 (QNH48_09725) rny 1974901..1976460 (+) 1560 WP_283954707.1 ribonuclease Y -
  QNH48_RS09730 (QNH48_09730) - 1976570..1977367 (+) 798 WP_283954708.1 TIGR00282 family metallophosphoesterase -
  QNH48_RS09735 (QNH48_09735) spoVS 1977539..1977799 (+) 261 WP_026692408.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37583.91 Da        Isoelectric Point: 5.0900

>NTDB_id=836640 QNH48_RS09720 WP_095249337.1 1973548..1974588(+) (recA) [Neobacillus sp. YX16]
MTDRKAALEMALKQIEKQFGKGSIMKMGEKTDTRILTSPSGSLALDSALGVGGYPRGRIIEIYGPESSGKTTVALHAIAE
VQAAGGQAAFIDAEHALDPAYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDILVVDSVAALVPKAEIEGEMGDS
HMGLQARLMSQALRKLSGVINKSKTIAIFINQVREKIGVMFGNPETTPGGRALKFYSTVRIEVRRGEALKQGTDIVGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDIGSELDIVQKSGSWYSYNEERIGQGRENAKTFLRENPSIRLEIQQK
IRAHYGLDGEKIVTEVDDDEQFELID

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=836640 QNH48_RS09720 WP_095249337.1 1973548..1974588(+) (recA) [Neobacillus sp. YX16]
GTGACTGATCGTAAAGCGGCCTTAGAAATGGCGCTAAAACAGATTGAAAAGCAATTTGGTAAAGGCTCTATTATGAAAAT
GGGAGAGAAAACAGACACAAGAATTTTAACTAGTCCTAGCGGCTCACTAGCACTAGATTCAGCACTTGGAGTTGGCGGAT
ACCCTAGAGGAAGAATTATTGAAATTTACGGACCAGAAAGCTCAGGTAAAACAACAGTTGCCTTACATGCTATTGCAGAA
GTACAAGCTGCAGGTGGACAAGCAGCGTTTATCGACGCCGAGCATGCCCTGGATCCAGCATATGCACAAAAACTTGGAGT
AAACATTGATGAGTTATTGCTATCCCAGCCAGACACTGGTGAACAAGCACTAGAAATCGCAGAGGCACTTGTACGAAGCG
GTGCAATTGATATTCTAGTAGTCGATTCCGTTGCAGCATTAGTTCCAAAAGCAGAAATTGAAGGAGAAATGGGAGATTCT
CATATGGGCCTTCAAGCCCGCTTGATGTCTCAAGCGCTCCGTAAACTTTCTGGTGTCATTAATAAATCAAAGACCATCGC
AATCTTTATTAACCAGGTTCGTGAAAAAATTGGAGTTATGTTTGGAAATCCCGAGACAACTCCTGGTGGTCGTGCATTGA
AATTCTACTCTACCGTACGTATTGAGGTGCGTCGTGGAGAAGCACTAAAGCAAGGTACTGATATAGTTGGAAACAAAACG
AAGATTAAGGTCGTTAAGAATAAAGTTGCTCCTCCATTCCGTACAGCTGAAGTGGATATTATGTATGGTGAAGGAATTTC
TAAAGAGGGCGAGATCATTGATATTGGCTCTGAATTAGATATCGTCCAAAAGAGCGGTTCTTGGTATTCATATAATGAGG
AAAGAATCGGTCAAGGCCGCGAAAATGCAAAGACTTTCTTAAGAGAAAATCCAAGCATTCGTCTTGAAATTCAGCAAAAA
ATCCGTGCGCACTATGGATTAGACGGTGAAAAGATTGTCACTGAAGTCGATGATGATGAGCAATTTGAATTAATAGATTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.787

96.243

0.835
  recA Latilactobacillus sakei subsp. sakei 23K

75.385

93.931

0.708
  recA Streptococcus mitis NCTC 12261

67.347

99.133

0.668
  recA Streptococcus pneumoniae R6

68.155

97.11

0.662
  recA Streptococcus pneumoniae Rx1

68.155

97.11

0.662
  recA Streptococcus pneumoniae D39

68.155

97.11

0.662
  recA Streptococcus pneumoniae TIGR4

68.155

97.11

0.662
  recA Streptococcus mitis SK321

68.06

96.821

0.659
  recA Streptococcus mutans UA159

68.389

95.087

0.65
  recA Streptococcus pyogenes NZ131

67.683

94.798

0.642
  recA Neisseria gonorrhoeae strain FA1090

64.897

97.977

0.636
  recA Neisseria gonorrhoeae MS11

64.897

97.977

0.636
  recA Neisseria gonorrhoeae MS11

64.897

97.977

0.636
  recA Lactococcus lactis subsp. cremoris KW2

65.35

95.087

0.621
  recA Ralstonia pseudosolanacearum GMI1000

65.549

94.798

0.621
  recA Acinetobacter baylyi ADP1

61.652

97.977

0.604
  recA Helicobacter pylori strain NCTC11637

63.222

95.087

0.601
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.357

97.977

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.497

94.22

0.598
  recA Helicobacter pylori 26695

62.918

95.087

0.598
  recA Acinetobacter baumannii D1279779

60.058

99.133

0.595
  recA Pseudomonas stutzeri DSM 10701

63.863

92.775

0.592
  recA Vibrio cholerae strain A1552

64.062

92.486

0.592
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.062

92.486

0.592
  recA Glaesserella parasuis strain SC1401

63.323

92.197

0.584
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.801

93.064

0.575