Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QNH48_RS09715 Genome accession   NZ_CP126115
Coordinates   1971754..1973007 (+) Length   417 a.a.
NCBI ID   WP_283955729.1    Uniprot ID   A0AA95SQW2
Organism   Neobacillus sp. YX16     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1966754..1978007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH48_RS09685 (QNH48_09685) - 1966806..1968095 (+) 1290 WP_283954703.1 pitrilysin family protein -
  QNH48_RS09690 (QNH48_09690) - 1968171..1968893 (+) 723 WP_283954704.1 SDR family oxidoreductase -
  QNH48_RS09695 (QNH48_09695) - 1968972..1969229 (+) 258 WP_283954705.1 DUF3243 domain-containing protein -
  QNH48_RS09700 (QNH48_09700) - 1969388..1970179 (+) 792 WP_095249343.1 DUF3388 domain-containing protein -
  QNH48_RS09705 (QNH48_09705) - 1970201..1971106 (+) 906 WP_283954706.1 RodZ domain-containing protein -
  QNH48_RS09710 (QNH48_09710) pgsA 1971157..1971735 (+) 579 WP_095249339.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QNH48_RS09715 (QNH48_09715) cinA 1971754..1973007 (+) 1254 WP_283955729.1 competence/damage-inducible protein A Machinery gene
  QNH48_RS09720 (QNH48_09720) recA 1973548..1974588 (+) 1041 WP_095249337.1 recombinase RecA Machinery gene
  QNH48_RS09725 (QNH48_09725) rny 1974901..1976460 (+) 1560 WP_283954707.1 ribonuclease Y -
  QNH48_RS09730 (QNH48_09730) - 1976570..1977367 (+) 798 WP_283954708.1 TIGR00282 family metallophosphoesterase -
  QNH48_RS09735 (QNH48_09735) spoVS 1977539..1977799 (+) 261 WP_026692408.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45571.28 Da        Isoelectric Point: 4.9549

>NTDB_id=836639 QNH48_RS09715 WP_283955729.1 1971754..1973007(+) (cinA) [Neobacillus sp. YX16]
MNAEIIAVGSELLLGQIVNSNARFLSQQLAGLGINVFFHTVVGDNPDRLRSAIEIAEKRSNLIIFTGGLGPTKDDLTKET
IARHLGKNLIMDQEALESIELYFKKGNRVMTENNKKQAIVLEDSTILPNNHGMAPGMMVDIGDHIYMLLPGPPKEMEPMF
LQFGTAALSKQVKTDEKIVSRVLRFFGIGEASLETEIIDLIEQQTNPTIAPLAADGECTLRLTAKHQDMQTAELMLDEAE
GKINDRVGQYLYGYDNTSLVAELMKVLKEKQLTISAAESLTGGLFQQELTSFPGVSSVFKGGVVCYTNEVKEKVLGVKKE
TIESFGVVSHECAKELAENVAELVSADIGISFTGVAGPDELEGKPVGTVYIGISIKGKQSVVEKLELGGSRETNRTRSVK
YGCYYLIKHLQESQKAN

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=836639 QNH48_RS09715 WP_283955729.1 1971754..1973007(+) (cinA) [Neobacillus sp. YX16]
ATGAATGCAGAAATTATTGCAGTTGGTTCTGAATTACTGCTAGGTCAAATCGTTAATAGTAATGCACGATTTCTATCGCA
ACAACTTGCTGGACTAGGCATAAATGTTTTTTTTCATACAGTAGTTGGTGATAATCCTGACCGATTAAGGTCTGCGATAG
AGATCGCAGAAAAGCGCTCTAATTTGATTATTTTTACCGGCGGGCTTGGACCGACAAAAGATGATTTAACGAAAGAAACA
ATTGCTCGCCATTTGGGGAAAAATCTCATTATGGATCAAGAGGCACTAGAATCTATTGAACTTTATTTTAAAAAGGGAAA
TAGGGTAATGACTGAAAATAATAAGAAGCAGGCTATTGTTTTAGAGGATTCTACTATCCTGCCAAATAATCATGGGATGG
CTCCTGGCATGATGGTCGATATTGGCGATCATATTTATATGCTTTTGCCTGGACCACCGAAAGAAATGGAGCCTATGTTT
TTACAATTTGGAACAGCCGCTCTATCAAAACAAGTAAAAACGGATGAGAAAATAGTTTCTAGAGTTTTAAGGTTCTTTGG
AATCGGAGAGGCTTCGTTAGAAACTGAAATCATTGATTTAATAGAACAGCAAACCAATCCAACAATTGCCCCGCTTGCTG
CAGACGGAGAATGTACCTTACGGCTTACTGCGAAGCATCAAGATATGCAAACAGCAGAGTTAATGCTGGATGAAGCAGAG
GGGAAAATTAACGATCGTGTAGGACAGTACTTATATGGGTATGACAATACTTCTTTGGTAGCTGAACTAATGAAAGTTTT
AAAAGAAAAACAATTAACAATCTCAGCGGCAGAGAGCTTAACAGGAGGGTTGTTTCAACAAGAACTAACTAGTTTTCCAG
GTGTAAGTTCGGTCTTTAAGGGTGGAGTTGTTTGTTACACGAATGAGGTTAAGGAGAAAGTCTTAGGAGTTAAAAAGGAA
ACAATTGAAAGTTTTGGCGTAGTAAGTCATGAGTGTGCTAAAGAGCTGGCTGAAAATGTTGCGGAATTAGTATCTGCTGA
TATAGGAATTAGTTTCACTGGTGTTGCTGGCCCTGACGAGCTTGAAGGAAAGCCTGTAGGAACCGTCTATATTGGTATTT
CGATTAAAGGGAAACAATCAGTGGTTGAAAAGCTGGAACTTGGCGGTTCGAGGGAAACAAACCGGACCCGTTCAGTAAAA
TACGGCTGCTATTATTTAATAAAGCATTTGCAAGAATCACAGAAAGCTAACTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

60.732

98.321

0.597
  cinA Streptococcus pneumoniae TIGR4

46.429

100

0.468
  cinA Streptococcus mitis SK321

46.429

100

0.468
  cinA Streptococcus mutans UA159

47.783

97.362

0.465
  cinA Streptococcus pneumoniae Rx1

45.952

100

0.463
  cinA Streptococcus pneumoniae R6

45.952

100

0.463
  cinA Streptococcus mitis NCTC 12261

45.952

100

0.463
  cinA Streptococcus pneumoniae D39

45.714

100

0.46
  cinA Streptococcus suis isolate S10

41.73

94.245

0.393