Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QNH39_RS09890 Genome accession   NZ_CP126114
Coordinates   1976441..1977481 (+) Length   346 a.a.
NCBI ID   WP_066085445.1    Uniprot ID   -
Organism   Neobacillus novalis strain XLM17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1971441..1982481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH39_RS09865 (QNH39_09865) - 1971888..1972133 (+) 246 WP_066085428.1 DUF3243 domain-containing protein -
  QNH39_RS09870 (QNH39_09870) - 1972266..1973057 (+) 792 WP_066096337.1 DUF3388 domain-containing protein -
  QNH39_RS09875 (QNH39_09875) - 1973079..1973993 (+) 915 WP_066085434.1 RodZ domain-containing protein -
  QNH39_RS09880 (QNH39_09880) pgsA 1974045..1974629 (+) 585 WP_066085437.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QNH39_RS09885 (QNH39_09885) cinA 1974654..1975907 (+) 1254 WP_066085441.1 competence/damage-inducible protein A Machinery gene
  QNH39_RS09890 (QNH39_09890) recA 1976441..1977481 (+) 1041 WP_066085445.1 recombinase RecA Machinery gene
  QNH39_RS09895 (QNH39_09895) rny 1977800..1979362 (+) 1563 WP_066085448.1 ribonuclease Y -
  QNH39_RS09900 (QNH39_09900) - 1979472..1980269 (+) 798 WP_066096342.1 TIGR00282 family metallophosphoesterase -
  QNH39_RS09905 (QNH39_09905) spoVS 1980430..1980690 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37580.91 Da        Isoelectric Point: 5.0793

>NTDB_id=836593 QNH39_RS09890 WP_066085445.1 1976441..1977481(+) (recA) [Neobacillus novalis strain XLM17]
MSDRKAALEMALKQIEKQFGKGSVMKMGEKTDTRILTSPSGSLALDAALGVGGYPRGRIIEIYGPESSGKTTVALHAIAE
VQAKGGQAAFIDAEHALDPTYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVVDSVAALVPKAEIEGEMGDS
HMGLQARLMSQALRKLSGAINKSKTIAIFINQIREKIGVMFGNPETTPGGRALKFYSTVRLEVRRSEALKQGTDIVGNKT
KIKIVKNKVAPPFRTAEVDIMYGVGISKEGETIDLGSELDIVQKSGSWYSYNDVRIGQGRENAKLYLKENPDICLEIQTK
IREHYGLDSEKVVTETDDDDQFELID

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=836593 QNH39_RS09890 WP_066085445.1 1976441..1977481(+) (recA) [Neobacillus novalis strain XLM17]
GTGAGTGACCGTAAGGCCGCCTTAGAAATGGCGTTAAAACAAATAGAAAAACAATTTGGTAAAGGTTCCGTCATGAAGAT
GGGAGAGAAAACAGATACGAGGATTTTAACATCTCCCAGCGGCTCCTTAGCACTTGATGCAGCACTAGGGGTTGGCGGAT
ACCCCCGTGGCAGAATAATTGAAATTTATGGTCCAGAAAGCTCGGGTAAAACAACAGTTGCCTTGCATGCGATTGCTGAA
GTCCAAGCAAAAGGTGGACAAGCAGCGTTTATCGACGCCGAGCATGCCCTCGATCCAACCTATGCACAAAAGTTGGGTGT
TAATATTGATGAGTTATTATTATCGCAGCCTGATACCGGTGAACAAGCACTTGAAATCGCAGAAGCATTAGTACGAAGCG
GTGCAATTGATATTATTGTAGTCGACTCAGTAGCCGCATTAGTTCCAAAAGCGGAAATTGAAGGCGAAATGGGAGATTCT
CATATGGGTTTACAAGCTCGCTTGATGTCTCAAGCACTTCGTAAACTATCTGGAGCCATTAACAAGTCCAAGACAATCGC
TATCTTTATTAACCAAATCCGTGAAAAAATTGGAGTTATGTTTGGGAACCCCGAAACCACACCTGGTGGTCGTGCACTAA
AGTTTTATTCAACAGTCCGTCTTGAAGTACGCCGTTCGGAAGCGTTAAAGCAAGGAACTGATATAGTGGGGAATAAAACC
AAAATTAAAATTGTAAAGAATAAGGTTGCTCCGCCATTCCGTACAGCAGAGGTAGATATCATGTATGGTGTAGGGATTTC
TAAGGAAGGCGAGACTATTGATCTAGGCTCCGAATTAGATATCGTTCAAAAGAGCGGTTCATGGTATTCTTATAACGATG
TAAGAATTGGTCAAGGCCGCGAAAATGCAAAGCTGTACTTAAAGGAAAACCCAGATATTTGCCTCGAAATTCAAACGAAA
ATCCGTGAGCATTACGGTTTAGACAGTGAAAAGGTTGTAACAGAAACAGATGATGACGATCAATTTGAGCTAATTGATTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

87.387

96.243

0.841
  recA Latilactobacillus sakei subsp. sakei 23K

72.093

99.422

0.717
  recA Streptococcus mitis NCTC 12261

66.181

99.133

0.656
  recA Streptococcus pneumoniae D39

65.698

99.422

0.653
  recA Streptococcus pneumoniae R6

65.698

99.422

0.653
  recA Streptococcus pneumoniae TIGR4

65.698

99.422

0.653
  recA Streptococcus pneumoniae Rx1

65.698

99.422

0.653
  recA Streptococcus mitis SK321

65.889

99.133

0.653
  recA Streptococcus mutans UA159

67.173

95.087

0.639
  recA Streptococcus pyogenes NZ131

67.073

94.798

0.636
  recA Neisseria gonorrhoeae MS11

64.327

98.844

0.636
  recA Neisseria gonorrhoeae MS11

64.327

98.844

0.636
  recA Neisseria gonorrhoeae strain FA1090

64.327

98.844

0.636
  recA Lactococcus lactis subsp. cremoris KW2

65.373

96.821

0.633
  recA Vibrio cholerae strain A1552

62.899

99.711

0.627
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.899

99.711

0.627
  recA Ralstonia pseudosolanacearum GMI1000

66.25

92.486

0.613
  recA Acinetobacter baylyi ADP1

64.923

93.931

0.61
  recA Acinetobacter baumannii D1279779

61.224

99.133

0.607
  recA Pseudomonas stutzeri DSM 10701

64.688

92.486

0.598
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.303

94.509

0.598
  recA Helicobacter pylori strain NCTC11637

62.918

95.087

0.598
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.062

97.977

0.598
  recA Glaesserella parasuis strain SC1401

60.882

98.266

0.598
  recA Helicobacter pylori 26695

62.614

95.087

0.595
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.562

92.486

0.569