Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QNH39_RS09885 Genome accession   NZ_CP126114
Coordinates   1974654..1975907 (+) Length   417 a.a.
NCBI ID   WP_066085441.1    Uniprot ID   A0AA95SCW6
Organism   Neobacillus novalis strain XLM17     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1969654..1980907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH39_RS09855 (QNH39_09855) - 1969722..1971011 (+) 1290 WP_066085422.1 pitrilysin family protein -
  QNH39_RS09860 (QNH39_09860) - 1971086..1971808 (+) 723 WP_066085425.1 SDR family oxidoreductase -
  QNH39_RS09865 (QNH39_09865) - 1971888..1972133 (+) 246 WP_066085428.1 DUF3243 domain-containing protein -
  QNH39_RS09870 (QNH39_09870) - 1972266..1973057 (+) 792 WP_066096337.1 DUF3388 domain-containing protein -
  QNH39_RS09875 (QNH39_09875) - 1973079..1973993 (+) 915 WP_066085434.1 RodZ domain-containing protein -
  QNH39_RS09880 (QNH39_09880) pgsA 1974045..1974629 (+) 585 WP_066085437.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QNH39_RS09885 (QNH39_09885) cinA 1974654..1975907 (+) 1254 WP_066085441.1 competence/damage-inducible protein A Machinery gene
  QNH39_RS09890 (QNH39_09890) recA 1976441..1977481 (+) 1041 WP_066085445.1 recombinase RecA Machinery gene
  QNH39_RS09895 (QNH39_09895) rny 1977800..1979362 (+) 1563 WP_066085448.1 ribonuclease Y -
  QNH39_RS09900 (QNH39_09900) - 1979472..1980269 (+) 798 WP_066096342.1 TIGR00282 family metallophosphoesterase -
  QNH39_RS09905 (QNH39_09905) spoVS 1980430..1980690 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45203.63 Da        Isoelectric Point: 4.9238

>NTDB_id=836592 QNH39_RS09885 WP_066085441.1 1974654..1975907(+) (cinA) [Neobacillus novalis strain XLM17]
MNAEIIAVGSELLLGQIVNTNARFLSQQLAGLGIDVYYHTVVGDNPDRVKAAIEHAETRSEIIIFTGGLGPTKDDLTKET
IARHLGKGLVMDETALASIELFFKRTNRVMTENNRKQALVLEGSQILANDHGMAPGMVLESAGHIYMLLPGPPKEMEPMF
LDYGGPALSSKTGSNEKIVSRVLRFFGIGEAALETEIMDIIEAQSNPTIAPLAGDGEVTLRLTAKHLDEKIAHMMLDDVE
KNINQRVGEFLYGYDNTSLLQELMNGLKERKLTITAAESLTGGLFQQELTTISGASSVFEGGVVCYSNEVKQQILQVNQE
TLDNHGAVSEQCAKELAENAARIFATDIGISFTGVAGPDELEGKPVGTVYIGIAVKGSPTMVEKITLSGTRNAIRNRSVK
YGCYFLLKKLKESQNAN

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=836592 QNH39_RS09885 WP_066085441.1 1974654..1975907(+) (cinA) [Neobacillus novalis strain XLM17]
GTGAATGCTGAGATTATCGCGGTTGGATCGGAATTGTTACTCGGTCAAATTGTAAATACGAATGCAAGATTTTTGTCTCA
GCAATTGGCTGGACTGGGAATTGATGTTTATTATCATACGGTCGTAGGTGATAATCCTGATAGAGTAAAAGCTGCGATAG
AGCATGCAGAAACGCGCTCCGAAATTATTATTTTTACTGGTGGACTCGGACCAACGAAGGATGATTTGACAAAGGAAACG
ATTGCTCGCCACCTTGGAAAAGGGCTCGTCATGGATGAAACAGCATTAGCGTCGATTGAGCTTTTTTTCAAGCGGACAAA
CCGGGTCATGACGGAAAACAACCGAAAGCAAGCCCTTGTTTTAGAAGGATCTCAAATTCTTGCAAATGATCATGGAATGG
CACCTGGAATGGTGTTAGAATCAGCTGGCCATATTTATATGCTCCTGCCTGGCCCGCCAAAAGAAATGGAACCAATGTTT
CTTGATTACGGAGGTCCAGCGCTTTCCTCTAAGACTGGTTCCAATGAGAAGATTGTCTCAAGAGTGCTCCGGTTTTTTGG
TATTGGGGAAGCAGCGCTGGAAACTGAAATCATGGATATTATTGAAGCACAAAGCAATCCTACAATTGCACCACTCGCAG
GTGATGGCGAGGTGACCTTAAGGCTGACCGCAAAACATCTGGATGAAAAGATTGCGCACATGATGCTTGATGATGTGGAA
AAAAACATCAATCAGCGTGTGGGTGAATTCCTTTATGGCTATGACAACACTTCGCTATTGCAAGAGCTGATGAACGGTTT
AAAGGAAAGAAAATTAACTATTACAGCTGCCGAGAGTTTAACAGGCGGGCTGTTCCAACAGGAGTTAACGACGATTTCAG
GTGCGAGCTCTGTGTTTGAGGGCGGAGTCGTTTGCTACTCAAATGAGGTTAAGCAGCAAATTTTGCAGGTGAACCAAGAA
ACGCTCGATAACCATGGTGCCGTGAGTGAGCAATGCGCCAAAGAGCTCGCGGAAAATGCAGCAAGGATTTTTGCAACAGA
TATTGGAATTAGCTTTACCGGTGTGGCTGGCCCTGACGAACTGGAAGGTAAGCCGGTTGGCACTGTTTATATTGGGATTG
CCGTTAAGGGAAGCCCAACAATGGTTGAAAAGATTACTCTTAGCGGTACAAGAAATGCGATCCGAAATCGATCCGTAAAA
TACGGATGCTATTTTTTGTTAAAGAAGTTGAAAGAATCACAGAATGCGAATTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-167)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

61.557

98.561

0.607
  cinA Streptococcus pneumoniae TIGR4

48.095

100

0.484
  cinA Streptococcus pneumoniae Rx1

48.095

100

0.484
  cinA Streptococcus pneumoniae R6

48.095

100

0.484
  cinA Streptococcus mitis SK321

47.857

100

0.482
  cinA Streptococcus pneumoniae D39

47.857

100

0.482
  cinA Streptococcus mitis NCTC 12261

47.619

100

0.48
  cinA Streptococcus mutans UA159

46.429

100

0.468
  cinA Streptococcus suis isolate S10

42.063

90.647

0.381