Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QNH20_RS09675 Genome accession   NZ_CP126110
Coordinates   2041422..2042462 (+) Length   346 a.a.
NCBI ID   WP_283922676.1    Uniprot ID   A0AA95MFZ4
Organism   Neobacillus sp. WH10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2036422..2047462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH20_RS09650 (QNH20_09650) - 2037073..2037330 (+) 258 WP_283922672.1 DUF3243 domain-containing protein -
  QNH20_RS09655 (QNH20_09655) - 2037520..2038311 (+) 792 WP_283923382.1 DUF3388 domain-containing protein -
  QNH20_RS09660 (QNH20_09660) - 2038323..2039237 (+) 915 WP_349632708.1 RodZ domain-containing protein -
  QNH20_RS09665 (QNH20_09665) pgsA 2039289..2039873 (+) 585 WP_283922674.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QNH20_RS09670 (QNH20_09670) cinA 2039909..2041162 (+) 1254 WP_283922675.1 competence/damage-inducible protein A Machinery gene
  QNH20_RS09675 (QNH20_09675) recA 2041422..2042462 (+) 1041 WP_283922676.1 recombinase RecA Machinery gene
  QNH20_RS09680 (QNH20_09680) rny 2042786..2044345 (+) 1560 WP_283922677.1 ribonuclease Y -
  QNH20_RS09685 (QNH20_09685) - 2044455..2045252 (+) 798 WP_283922678.1 TIGR00282 family metallophosphoesterase -
  QNH20_RS09690 (QNH20_09690) spoVS 2045430..2045690 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37694.88 Da        Isoelectric Point: 5.0959

>NTDB_id=836441 QNH20_RS09675 WP_283922676.1 2041422..2042462(+) (recA) [Neobacillus sp. WH10]
MSDRKAALEMALKQIEKQFGKGSIMKMGEQTETRISTVPSGSLALDAALGVGGYPRGRIIEIYGPESSGKTTVALHAIAE
VQAKGGQAAFIDAEHALDPTYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAVFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAETLKQGNDMVGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGSELDIVQKSGSWYSYNDERLGQGRENAKLFLKENPDVRQEIHQK
IREHYGLDGDKVVTESEEDEQFNLLD

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=836441 QNH20_RS09675 WP_283922676.1 2041422..2042462(+) (recA) [Neobacillus sp. WH10]
GTGAGTGATCGTAAAGCGGCATTAGAAATGGCGTTAAAGCAAATAGAAAAACAATTCGGTAAAGGCTCAATAATGAAAAT
GGGAGAACAAACAGAGACAAGGATTTCTACCGTTCCAAGCGGCTCTCTAGCGCTAGATGCAGCACTAGGAGTAGGTGGAT
ACCCTAGAGGTCGTATAATTGAAATTTATGGCCCTGAAAGCTCTGGTAAAACAACCGTAGCTTTGCATGCAATTGCGGAA
GTGCAAGCAAAAGGGGGACAAGCAGCGTTTATTGACGCTGAGCATGCCTTGGATCCGACTTATGCACAAAAATTAGGTGT
TAACATTGATGAATTATTGTTATCACAGCCAGACACAGGTGAACAAGCACTTGAAATCGCTGAGGCACTAGTTCGAAGTG
GTGCGGTCGATATTATCGTAATTGATTCAGTCGCTGCATTAGTTCCAAAAGCGGAAATTGAAGGCGAAATGGGTGACTCC
CATGTAGGTTTACAGGCACGTTTGATGTCTCAAGCACTTCGCAAACTATCAGGTGCCATCAACAAATCTAAAACAATTGC
AGTCTTCATTAACCAGATTCGTGAAAAGGTCGGAGTTATGTTTGGAAACCCCGAGACAACACCTGGGGGACGTGCGCTCA
AGTTTTACTCGACAATTCGTCTTGAAGTACGCCGTGCTGAAACGTTAAAGCAAGGTAATGACATGGTCGGAAATAAGACA
AAAATAAAAGTAGTAAAGAACAAAGTGGCGCCACCATTCCGTACAGCTGAAGTGGATATTATGTACGGTGAAGGTATTTC
AAAAGAAGGCGAAATCATCGATCTAGGCTCTGAATTAGATATCGTTCAAAAGAGCGGCTCATGGTATTCCTATAACGATG
AAAGACTTGGTCAGGGCCGTGAAAATGCAAAGTTATTCTTGAAGGAAAACCCAGATGTTCGTCAAGAAATTCACCAAAAA
ATCCGTGAGCATTATGGATTAGATGGTGATAAAGTGGTAACAGAATCAGAGGAAGATGAGCAGTTTAATTTACTAGATTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

89.189

96.243

0.858
  recA Latilactobacillus sakei subsp. sakei 23K

74.419

99.422

0.74
  recA Streptococcus pneumoniae TIGR4

66.859

100

0.671
  recA Streptococcus pneumoniae D39

66.859

100

0.671
  recA Streptococcus pneumoniae R6

66.859

100

0.671
  recA Streptococcus pneumoniae Rx1

66.859

100

0.671
  recA Streptococcus mitis SK321

67.055

99.133

0.665
  recA Streptococcus mitis NCTC 12261

66.764

99.133

0.662
  recA Lactococcus lactis subsp. cremoris KW2

66.369

97.11

0.645
  recA Streptococcus mutans UA159

67.781

95.087

0.645
  recA Neisseria gonorrhoeae MS11

64.62

98.844

0.639
  recA Neisseria gonorrhoeae MS11

64.62

98.844

0.639
  recA Neisseria gonorrhoeae strain FA1090

64.62

98.844

0.639
  recA Streptococcus pyogenes NZ131

67.378

94.798

0.639
  recA Ralstonia pseudosolanacearum GMI1000

66.972

94.509

0.633
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.242

97.977

0.61
  recA Acinetobacter baylyi ADP1

59.483

100

0.598
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.997

94.509

0.595
  recA Glaesserella parasuis strain SC1401

61.012

97.11

0.592
  recA Pseudomonas stutzeri DSM 10701

63.75

92.486

0.59
  recA Acinetobacter baumannii D1279779

59.475

99.133

0.59
  recA Helicobacter pylori 26695

62.769

93.931

0.59
  recA Helicobacter pylori strain NCTC11637

62.769

93.931

0.59
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.551

92.775

0.59
  recA Vibrio cholerae strain A1552

63.551

92.775

0.59
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.938

92.486

0.564