Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QNH20_RS09670 Genome accession   NZ_CP126110
Coordinates   2039909..2041162 (+) Length   417 a.a.
NCBI ID   WP_283922675.1    Uniprot ID   A0AA95S5W8
Organism   Neobacillus sp. WH10     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2034909..2046162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH20_RS09640 (QNH20_09640) - 2034909..2036201 (+) 1293 WP_283922670.1 pitrilysin family protein -
  QNH20_RS09645 (QNH20_09645) - 2036271..2036993 (+) 723 WP_283922671.1 SDR family oxidoreductase -
  QNH20_RS09650 (QNH20_09650) - 2037073..2037330 (+) 258 WP_283922672.1 DUF3243 domain-containing protein -
  QNH20_RS09655 (QNH20_09655) - 2037520..2038311 (+) 792 WP_283923382.1 DUF3388 domain-containing protein -
  QNH20_RS09660 (QNH20_09660) - 2038323..2039237 (+) 915 WP_349632708.1 RodZ domain-containing protein -
  QNH20_RS09665 (QNH20_09665) pgsA 2039289..2039873 (+) 585 WP_283922674.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QNH20_RS09670 (QNH20_09670) cinA 2039909..2041162 (+) 1254 WP_283922675.1 competence/damage-inducible protein A Machinery gene
  QNH20_RS09675 (QNH20_09675) recA 2041422..2042462 (+) 1041 WP_283922676.1 recombinase RecA Machinery gene
  QNH20_RS09680 (QNH20_09680) rny 2042786..2044345 (+) 1560 WP_283922677.1 ribonuclease Y -
  QNH20_RS09685 (QNH20_09685) - 2044455..2045252 (+) 798 WP_283922678.1 TIGR00282 family metallophosphoesterase -
  QNH20_RS09690 (QNH20_09690) spoVS 2045430..2045690 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45454.94 Da        Isoelectric Point: 5.1113

>NTDB_id=836440 QNH20_RS09670 WP_283922675.1 2039909..2041162(+) (cinA) [Neobacillus sp. WH10]
MNAEIIAVGSELLLGQIVNTNARFLSQQLAGLGINVYFHTVVGDNPDRLKSAIEIAEKRAKMIIFTGGLGPTKDDLTKET
IARHIGKELVMDQTALESIEFFFKQTNRVMTDNNRKQALVLEGSHILPNEHGMAPGMVVETDSHIYMLLPGPPKEMEPML
LRYGCKALSSKNDSNEKIVSRVLRFFGIGEAALETEIIDLIDAQSNPTIAPLAGDGEVTLRLTAKHVDEASAQSMLDEME
NTINQRVGNFLYGYDNTSLLEELTKALKERKLTITAAESLTGGLFQQELTSISGASSVFKGGVVCYSNEVKQQVLQVKQE
TLEKYGAVSEQCAKELAENAARLVKSDIGISFTGVAGPDELEGKPVGTVYIGIAINGTPTVVEKITLGGTREANRNRAVK
FGCYFILRNLKESQNTN

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=836440 QNH20_RS09670 WP_283922675.1 2039909..2041162(+) (cinA) [Neobacillus sp. WH10]
ATGAATGCTGAGATTATTGCCGTTGGTTCAGAACTATTACTGGGTCAAATTGTTAACACAAATGCGCGCTTCTTATCACA
GCAATTAGCCGGACTCGGTATTAATGTTTATTTTCATACTGTCGTTGGAGATAACCCTGATCGCTTAAAATCAGCGATTG
AAATTGCAGAAAAACGTGCTAAAATGATTATCTTTACTGGCGGACTAGGGCCGACAAAGGATGATTTGACGAAGGAAACA
ATTGCCCGTCACATAGGAAAAGAACTTGTTATGGATCAAACAGCATTAGAATCAATTGAGTTTTTTTTCAAGCAGACAAA
CCGTGTGATGACGGATAATAATCGAAAGCAGGCACTTGTATTAGAAGGTTCACACATCCTCCCAAATGAACATGGAATGG
CCCCTGGAATGGTGGTAGAAACCGACAGCCACATTTATATGCTTTTGCCTGGGCCCCCAAAGGAAATGGAACCGATGTTA
CTTCGATATGGGTGTAAGGCACTATCATCAAAAAACGACTCGAACGAGAAAATTGTCTCGAGAGTGTTACGATTCTTTGG
CATTGGTGAGGCCGCTTTGGAAACTGAAATTATTGATTTAATTGATGCGCAAAGCAATCCCACGATTGCTCCGCTCGCAG
GTGATGGAGAGGTTACCTTAAGGTTGACGGCCAAACATGTGGACGAAGCGAGTGCACAATCTATGCTTGATGAAATGGAA
AATACTATAAATCAACGTGTTGGAAATTTTCTATATGGATATGACAACACATCATTATTGGAAGAACTGACGAAAGCTTT
AAAGGAAAGAAAACTTACGATTACAGCTGCTGAGAGTTTGACTGGCGGGTTGTTTCAACAGGAGTTAACATCTATTTCAG
GTGCAAGTTCCGTGTTTAAAGGCGGGGTTGTATGCTATTCTAATGAAGTAAAGCAGCAAGTATTACAAGTTAAACAAGAA
ACACTTGAAAAATATGGTGCCGTGAGTGAACAATGTGCAAAAGAGCTGGCTGAAAATGCTGCCAGGCTGGTGAAAAGCGA
TATTGGGATAAGCTTCACAGGTGTGGCCGGACCCGATGAGCTTGAAGGCAAGCCAGTTGGTACGGTTTATATTGGAATAG
CGATAAATGGAACACCAACGGTAGTTGAAAAAATTACCCTTGGTGGAACGAGGGAAGCAAACCGGAACCGAGCGGTAAAA
TTTGGCTGTTATTTTATACTTCGTAATTTAAAAGAATCACAGAATACTAATTAG

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-161)

Competence-damaged protein (CinA)

(257-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

61.463

98.321

0.604
  cinA Streptococcus mitis SK321

49.165

100

0.494
  cinA Streptococcus mitis NCTC 12261

48.804

100

0.489
  cinA Streptococcus pneumoniae TIGR4

48.681

100

0.487
  cinA Streptococcus pneumoniae Rx1

48.201

100

0.482
  cinA Streptococcus pneumoniae R6

48.201

100

0.482
  cinA Streptococcus pneumoniae D39

47.962

100

0.48
  cinA Streptococcus mutans UA159

46.667

100

0.47
  cinA Streptococcus suis isolate S10

39.518

99.52

0.393