Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QNH15_RS11460 Genome accession   NZ_CP126109
Coordinates   2149438..2150490 (+) Length   350 a.a.
NCBI ID   WP_283894754.1    Uniprot ID   -
Organism   Fictibacillus enclensis strain TL11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2144438..2155490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH15_RS11430 (QNH15_11430) - 2144484..2145212 (+) 729 WP_283894749.1 SDR family oxidoreductase -
  QNH15_RS11435 (QNH15_11435) - 2145292..2145543 (+) 252 WP_283894750.1 DUF3243 domain-containing protein -
  QNH15_RS11440 (QNH15_11440) - 2145668..2146441 (+) 774 WP_283894751.1 DUF3388 domain-containing protein -
  QNH15_RS11445 (QNH15_11445) - 2146467..2147360 (+) 894 WP_283894752.1 helix-turn-helix domain-containing protein -
  QNH15_RS11450 (QNH15_11450) pgsA 2147408..2147986 (+) 579 WP_129475933.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QNH15_RS11455 (QNH15_11455) cinA 2148073..2149314 (+) 1242 WP_283894753.1 competence/damage-inducible protein A Machinery gene
  QNH15_RS11460 (QNH15_11460) recA 2149438..2150490 (+) 1053 WP_283894754.1 recombinase RecA Machinery gene
  QNH15_RS11465 (QNH15_11465) rny 2150800..2152368 (+) 1569 WP_283894755.1 ribonuclease Y -
  QNH15_RS11470 (QNH15_11470) - 2152429..2153223 (+) 795 WP_283894756.1 TIGR00282 family metallophosphoesterase -
  QNH15_RS11475 (QNH15_11475) spoVS 2153358..2153618 (+) 261 WP_010193268.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37952.06 Da        Isoelectric Point: 4.7894

>NTDB_id=836396 QNH15_RS11460 WP_283894754.1 2149438..2150490(+) (recA) [Fictibacillus enclensis strain TL11]
MSDRKAALDMALRQIEKQFGKGSIMKLGEQAEQRVSTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQKNGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILIIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAISKSKTIAVFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGTDMVGNKT
RIKVVKNKVAPPFKQAEVDIMYGEGISREGEILDIGSDIDVVQKSGAWYSFDGDRLGQGRENSKQFLKENEEVAEEIITQ
IRSYYQLGGEVNTVDAAARPEEKEEFELTE

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=836396 QNH15_RS11460 WP_283894754.1 2149438..2150490(+) (recA) [Fictibacillus enclensis strain TL11]
ATGAGCGACCGCAAAGCGGCACTTGACATGGCCTTGCGCCAGATCGAAAAGCAATTCGGAAAAGGTTCCATCATGAAACT
TGGCGAGCAGGCTGAACAGAGAGTCTCCACCATCTCGAGCGGATCTTTGGCGCTTGATATCGCGCTTGGTGTAGGCGGAT
ATCCACGGGGAAGAATCATTGAAGTTTACGGACCTGAATCTTCCGGTAAAACAACCGTTGCGCTTCATGCGATAGCTGAA
GTCCAGAAAAACGGCGGACAAGCTGCTTTTATTGATGCGGAGCATGCCCTTGACCCGGTGTATGCCCAAAAACTTGGCGT
AAACATCGACGAGCTTCTGCTGTCACAGCCGGATACAGGCGAACAGGCGCTTGAAATTGCTGAAGCCCTAGTCCGAAGCG
GTGCAGTGGATATTCTGATCATTGACTCTGTTGCGGCTCTTGTGCCAAAAGCAGAGATTGAAGGCGAAATGGGAGATTCC
CATGTGGGTCTTCAGGCAAGATTGATGTCCCAGGCTTTGCGTAAGCTTTCCGGAGCAATCAGCAAATCCAAAACCATCGC
GGTGTTTATCAACCAGATTCGTGAAAAAGTGGGCGTTATGTTTGGAAACCCTGAAACCACTCCGGGTGGACGTGCCCTTA
AGTTTTATTCTTCTGTCCGTCTTGAAGTCCGCCGTGCGGAAACCCTCAAGCAGGGAACCGATATGGTAGGAAACAAAACA
AGAATCAAAGTGGTTAAAAACAAGGTTGCACCTCCGTTTAAACAGGCAGAGGTGGACATTATGTACGGCGAAGGGATTTC
AAGAGAAGGGGAAATCCTTGATATTGGTTCCGATATTGACGTGGTTCAAAAGAGTGGCGCCTGGTACTCCTTTGATGGAG
ACCGTCTCGGCCAGGGCAGAGAGAACTCCAAGCAATTCTTAAAGGAAAATGAAGAAGTGGCTGAAGAAATCATCACCCAA
ATCAGAAGCTATTATCAATTGGGTGGGGAAGTCAACACCGTTGATGCTGCTGCCCGGCCGGAAGAAAAAGAGGAATTTGA
GCTAACCGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

84.404

93.429

0.789
  recA Latilactobacillus sakei subsp. sakei 23K

75.232

92.286

0.694
  recA Streptococcus pneumoniae D39

67.045

100

0.674
  recA Streptococcus pneumoniae R6

67.045

100

0.674
  recA Streptococcus pneumoniae TIGR4

67.045

100

0.674
  recA Streptococcus pneumoniae Rx1

67.045

100

0.674
  recA Streptococcus mutans UA159

68.358

95.714

0.654
  recA Streptococcus mitis SK321

69.091

94.286

0.651
  recA Streptococcus mitis NCTC 12261

68.788

94.286

0.649
  recA Streptococcus pyogenes NZ131

68.196

93.429

0.637
  recA Neisseria gonorrhoeae MS11

67.385

92.857

0.626
  recA Neisseria gonorrhoeae MS11

67.385

92.857

0.626
  recA Neisseria gonorrhoeae strain FA1090

67.385

92.857

0.626
  recA Lactococcus lactis subsp. cremoris KW2

66.364

94.286

0.626
  recA Ralstonia pseudosolanacearum GMI1000

64.955

94.571

0.614
  recA Glaesserella parasuis strain SC1401

60.807

99.143

0.603
  recA Vibrio cholerae strain A1552

65.312

91.429

0.597
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.312

91.429

0.597
  recA Acinetobacter baumannii D1279779

60.116

98.857

0.594
  recA Acinetobacter baylyi ADP1

59.259

100

0.594
  recA Pseudomonas stutzeri DSM 10701

64.174

91.714

0.589
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.934

94.571

0.586
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.818

94.286

0.583
  recA Helicobacter pylori strain NCTC11637

61.371

91.714

0.563
  recA Helicobacter pylori 26695

61.371

91.714

0.563
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.021

93.429

0.551