Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QNH17_RS08990 Genome accession   NZ_CP126107
Coordinates   1850670..1851713 (+) Length   347 a.a.
NCBI ID   WP_144549118.1    Uniprot ID   -
Organism   Neobacillus sp. SuZ13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1845670..1856713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH17_RS08965 (QNH17_08965) - 1846339..1846596 (+) 258 WP_098571722.1 DUF3243 domain-containing protein -
  QNH17_RS08970 (QNH17_08970) - 1846768..1847556 (+) 789 WP_283878344.1 DUF3388 domain-containing protein -
  QNH17_RS08975 (QNH17_08975) - 1847578..1848474 (+) 897 WP_283878345.1 RodZ domain-containing protein -
  QNH17_RS08980 (QNH17_08980) pgsA 1848526..1849110 (+) 585 WP_283878346.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QNH17_RS08985 (QNH17_08985) cinA 1849146..1850399 (+) 1254 WP_283878347.1 competence/damage-inducible protein A Machinery gene
  QNH17_RS08990 (QNH17_08990) recA 1850670..1851713 (+) 1044 WP_144549118.1 recombinase RecA Machinery gene
  QNH17_RS08995 (QNH17_08995) rny 1852039..1853598 (+) 1560 WP_098571727.1 ribonuclease Y -
  QNH17_RS09000 (QNH17_09000) - 1853712..1854509 (+) 798 WP_283878348.1 TIGR00282 family metallophosphoesterase -
  QNH17_RS09005 (QNH17_09005) spoVS 1854875..1855135 (+) 261 WP_026566505.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37731.02 Da        Isoelectric Point: 5.0828

>NTDB_id=836294 QNH17_RS08990 WP_144549118.1 1850670..1851713(+) (recA) [Neobacillus sp. SuZ13]
MSNDRKAALEMALKQIEKQFGKGSVMKMGEKTDTKILTSPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIA
EVQANGGQAAFIDAEHALDPTYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDILIVDSVAALVPKAEIEGEMGD
SHVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKIGVMFGNPETTPGGRALKFYSTVRLEVRRAEALKQGTDIVGNK
TKIKIVKNKVAPPFRTAEVDIMYGEGISKEGEIVDLGSELDIVQKSGSWYSYNDIRIGQGRENAKLYLKENPDIRLQIQT
KIREHYGLDGEKFVTETDDDEQFELID

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=836294 QNH17_RS08990 WP_144549118.1 1850670..1851713(+) (recA) [Neobacillus sp. SuZ13]
GTGAGTAATGATCGTAAAGCGGCCTTAGAAATGGCGTTAAAGCAAATAGAAAAGCAATTTGGTAAAGGTTCCGTCATGAA
GATGGGAGAAAAGACGGACACGAAGATTTTAACGAGTCCAAGCGGCTCATTAGCACTTGATGCAGCGCTTGGAGTGGGTG
GATATCCTCGAGGCCGTATTATTGAAGTGTATGGCCCTGAGAGCTCTGGTAAAACAACGGTTGCTTTACATGCAATTGCT
GAAGTTCAAGCAAATGGTGGACAAGCCGCATTTATTGATGCTGAACATGCCCTTGACCCAACCTATGCCCAAAAATTGGG
TGTTAACATTGATGAGTTATTATTATCACAGCCTGATACGGGTGAACAAGCACTTGAAATCGCGGAGGCATTAGTACGAA
GCGGAGCCATTGATATTCTTATCGTTGACTCTGTAGCCGCACTGGTTCCAAAAGCGGAAATTGAAGGGGAAATGGGAGAT
TCTCACGTTGGTTTACAAGCACGTCTAATGTCACAGGCACTTCGTAAACTATCTGGAGCGATCAACAAATCTAAGACAAT
CGCAATCTTTATTAACCAAATCCGTGAAAAAATTGGTGTAATGTTCGGGAATCCTGAAACCACACCTGGTGGTCGTGCGT
TAAAGTTTTATTCAACAGTCCGTCTTGAAGTGCGCCGTGCGGAAGCGTTGAAGCAAGGAACTGACATTGTTGGGAATAAA
ACCAAAATTAAAATCGTAAAGAATAAGGTTGCTCCGCCTTTCCGTACAGCAGAAGTAGATATTATGTATGGCGAAGGGAT
TTCTAAGGAAGGCGAGATAGTTGATCTAGGCTCCGAATTAGATATCGTTCAAAAGAGCGGTTCATGGTATTCCTATAACG
ATATTAGAATTGGTCAAGGCCGTGAAAACGCAAAGCTGTACTTAAAGGAAAACCCTGATATTCGTCTCCAGATTCAAACG
AAAATCCGTGAACATTATGGCTTAGACGGTGAAAAGTTTGTAACTGAAACAGACGATGATGAACAATTTGAATTAATTGA
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

87.349

95.677

0.836
  recA Latilactobacillus sakei subsp. sakei 23K

72.464

99.424

0.72
  recA Streptococcus mitis NCTC 12261

66.764

98.847

0.66
  recA Streptococcus pneumoniae D39

67.353

97.983

0.66
  recA Streptococcus pneumoniae Rx1

67.353

97.983

0.66
  recA Streptococcus pneumoniae R6

67.353

97.983

0.66
  recA Streptococcus pneumoniae TIGR4

67.353

97.983

0.66
  recA Streptococcus mitis SK321

66.472

98.847

0.657
  recA Streptococcus mutans UA159

67.169

95.677

0.643
  recA Streptococcus pyogenes NZ131

66.767

95.389

0.637
  recA Neisseria gonorrhoeae strain FA1090

64.035

98.559

0.631
  recA Neisseria gonorrhoeae MS11

64.035

98.559

0.631
  recA Neisseria gonorrhoeae MS11

64.035

98.559

0.631
  recA Ralstonia pseudosolanacearum GMI1000

63.158

98.559

0.622
  recA Lactococcus lactis subsp. cremoris KW2

65.35

94.813

0.62
  recA Vibrio cholerae strain A1552

61.207

100

0.614
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.207

100

0.614
  recA Acinetobacter baumannii D1279779

60.405

99.712

0.602
  recA Helicobacter pylori strain NCTC11637

62.651

95.677

0.599
  recA Pseudomonas stutzeri DSM 10701

64.087

93.084

0.597
  recA Helicobacter pylori 26695

62.349

95.677

0.597
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.234

98.559

0.594
  recA Acinetobacter baylyi ADP1

63.077

93.66

0.591
  recA Glaesserella parasuis strain SC1401

60.294

97.983

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.006

94.813

0.588
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.559

92.795

0.562