Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QNH17_RS08985 Genome accession   NZ_CP126107
Coordinates   1849146..1850399 (+) Length   417 a.a.
NCBI ID   WP_283878347.1    Uniprot ID   A0AA95M925
Organism   Neobacillus sp. SuZ13     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1844146..1855399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH17_RS08955 (QNH17_08955) - 1844174..1845466 (+) 1293 WP_283878343.1 pitrilysin family protein -
  QNH17_RS08960 (QNH17_08960) - 1845534..1846256 (+) 723 WP_283879465.1 SDR family oxidoreductase -
  QNH17_RS08965 (QNH17_08965) - 1846339..1846596 (+) 258 WP_098571722.1 DUF3243 domain-containing protein -
  QNH17_RS08970 (QNH17_08970) - 1846768..1847556 (+) 789 WP_283878344.1 DUF3388 domain-containing protein -
  QNH17_RS08975 (QNH17_08975) - 1847578..1848474 (+) 897 WP_283878345.1 RodZ domain-containing protein -
  QNH17_RS08980 (QNH17_08980) pgsA 1848526..1849110 (+) 585 WP_283878346.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QNH17_RS08985 (QNH17_08985) cinA 1849146..1850399 (+) 1254 WP_283878347.1 competence/damage-inducible protein A Machinery gene
  QNH17_RS08990 (QNH17_08990) recA 1850670..1851713 (+) 1044 WP_144549118.1 recombinase RecA Machinery gene
  QNH17_RS08995 (QNH17_08995) rny 1852039..1853598 (+) 1560 WP_098571727.1 ribonuclease Y -
  QNH17_RS09000 (QNH17_09000) - 1853712..1854509 (+) 798 WP_283878348.1 TIGR00282 family metallophosphoesterase -
  QNH17_RS09005 (QNH17_09005) spoVS 1854875..1855135 (+) 261 WP_026566505.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45278.99 Da        Isoelectric Point: 5.6963

>NTDB_id=836293 QNH17_RS08985 WP_283878347.1 1849146..1850399(+) (cinA) [Neobacillus sp. SuZ13]
MNAEIIAVGSELLLGQIVNTNARFLSQQLANLGINVFFHTVVGDNPERLESAIELAEKRADLIIFTGGLGPTKDDLTKET
IARHLGKELVIDEDALTSIELYFKRTNRVMTENNRKQALVLSGAHILPNDHGMAPGMVIEAKDHTYMLLPGPPKELEPMF
SQYGCQALSKANLAKEVIVSRVLRFFGIGEAALETEIMDLIDAQSNPTIAPLAGDGEVTLRLTAKHVDGKIAQSLLDNLE
NTINQRVGSFFYGYDQTSLLEEVMKTLQTRKLTITAAESLTGGLFQQGLTSISGASSVFTGGVVCYSNQVKQEILKVRQE
TLETHGAVSEQCARELAENATKLFKTDLGISFTGVAGPEELEGKPVGTVFIGIAIKGKPTIVEKLILGGTREANRGRAVK
YGCHFLLQLLKESQNAK

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=836293 QNH17_RS08985 WP_283878347.1 1849146..1850399(+) (cinA) [Neobacillus sp. SuZ13]
ATGAACGCTGAGATTATTGCAGTTGGTTCGGAGTTATTGCTCGGTCAAATTGTAAATACGAATGCACGATTTTTGTCTCA
GCAATTGGCGAATCTTGGGATTAATGTCTTTTTTCATACGGTAGTTGGTGATAATCCTGAAAGATTGGAATCGGCAATTG
AATTAGCTGAGAAACGTGCAGATCTTATTATCTTTACGGGTGGCCTTGGACCAACAAAGGATGATTTAACGAAGGAAACA
ATTGCGCGCCACCTTGGAAAAGAACTTGTAATTGATGAGGATGCGTTAACTTCGATAGAATTGTACTTTAAACGAACAAA
TCGTGTAATGACAGAAAATAACCGAAAACAGGCACTTGTATTAAGCGGGGCACATATTCTTCCAAATGATCATGGAATGG
CTCCAGGAATGGTTATTGAAGCTAAGGACCACACCTATATGCTGCTTCCTGGCCCGCCTAAGGAACTTGAACCGATGTTT
AGTCAATACGGGTGTCAGGCACTTTCTAAAGCAAACCTAGCTAAAGAGGTAATTGTTTCAAGGGTGTTAAGGTTTTTTGG
AATTGGTGAAGCTGCCTTGGAAACCGAGATCATGGATTTAATTGATGCTCAGAGCAATCCAACGATCGCTCCGCTCGCTG
GGGATGGGGAGGTTACATTGAGGCTGACTGCAAAGCATGTAGATGGAAAAATAGCTCAGTCACTGCTCGATAATCTAGAA
AATACCATTAATCAGCGTGTAGGTTCATTTTTTTATGGATATGATCAAACTTCTCTTCTGGAAGAAGTAATGAAGACCTT
ACAGACACGAAAACTTACAATTACTGCGGCTGAAAGTTTAACCGGTGGACTGTTCCAACAGGGGCTGACCTCCATTTCAG
GTGCAAGCTCCGTGTTCACAGGTGGAGTTGTCTGCTATTCAAATCAAGTAAAACAAGAGATTTTAAAAGTTCGGCAAGAA
ACGCTTGAAACACATGGTGCAGTAAGTGAACAATGTGCTAGGGAACTGGCTGAAAATGCGACCAAATTATTCAAAACGGA
TCTTGGGATTAGTTTTACTGGTGTAGCAGGTCCTGAAGAACTTGAGGGCAAGCCAGTTGGTACTGTATTTATTGGGATTG
CAATAAAGGGAAAGCCAACCATTGTTGAAAAACTTATCCTTGGCGGAACCAGAGAAGCAAACCGCGGTCGTGCCGTAAAA
TATGGATGCCATTTTCTCCTACAATTGTTAAAAGAGTCACAGAATGCTAAATAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-164)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

60.244

98.321

0.592
  cinA Streptococcus pneumoniae TIGR4

48.571

100

0.489
  cinA Streptococcus pneumoniae Rx1

48.333

100

0.487
  cinA Streptococcus pneumoniae R6

48.333

100

0.487
  cinA Streptococcus pneumoniae D39

48.095

100

0.484
  cinA Streptococcus mitis SK321

47.971

100

0.482
  cinA Streptococcus mitis NCTC 12261

47.381

100

0.477
  cinA Streptococcus mutans UA159

47.255

100

0.475
  cinA Streptococcus suis isolate S10

42.328

90.647

0.384