Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QNH44_RS09630 Genome accession   NZ_CP126102
Coordinates   1838999..1840039 (+) Length   346 a.a.
NCBI ID   WP_283914306.1    Uniprot ID   -
Organism   Cytobacillus firmus strain LN5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1833999..1845039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH44_RS09605 (QNH44_09605) - 1834274..1834531 (+) 258 WP_048008965.1 DUF3243 domain-containing protein -
  QNH44_RS09610 (QNH44_09610) - 1834765..1835556 (+) 792 WP_035330727.1 YmfK family protein -
  QNH44_RS09615 (QNH44_09615) - 1835578..1836483 (+) 906 WP_283914305.1 RodZ domain-containing protein -
  QNH44_RS09620 (QNH44_09620) pgsA 1836870..1837448 (+) 579 WP_035330725.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QNH44_RS09625 (QNH44_09625) cinA 1837475..1838725 (+) 1251 WP_163141660.1 competence/damage-inducible protein A Machinery gene
  QNH44_RS09630 (QNH44_09630) recA 1838999..1840039 (+) 1041 WP_283914306.1 recombinase RecA Machinery gene
  QNH44_RS09635 (QNH44_09635) rny 1840410..1841972 (+) 1563 WP_048008961.1 ribonuclease Y -
  QNH44_RS09640 (QNH44_09640) - 1842102..1842899 (+) 798 WP_163141658.1 TIGR00282 family metallophosphoesterase -
  QNH44_RS09645 (QNH44_09645) spoVS 1843232..1843492 (+) 261 WP_009330666.1 stage V sporulation protein SpoVS -
  QNH44_RS09650 (QNH44_09650) - 1843649..1844572 (+) 924 WP_163141655.1 dipeptidase -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37617.86 Da        Isoelectric Point: 4.9253

>NTDB_id=835995 QNH44_RS09630 WP_283914306.1 1838999..1840039(+) (recA) [Cytobacillus firmus strain LN5]
MSDRQAALEMALKQIEKQFGKGSIMKLGEQTDRRISTVPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQASGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDILVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKIGIMFGNPETTPGGRALKFYSSIRLEVRRAETLKQGNEMVGNKT
KIKVVKNKVAPPFRVAEVDIMYGEGISKEGEIIDLGSELDIVQKSGSWYSFNEERLGQGRENAKVFLKENPEIRLTIQKQ
IREHYGLDEEKVASGDEGQEEFELID

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=835995 QNH44_RS09630 WP_283914306.1 1838999..1840039(+) (recA) [Cytobacillus firmus strain LN5]
GTGAGTGATCGTCAAGCAGCTCTTGAAATGGCGTTAAAACAAATAGAAAAGCAATTTGGTAAAGGTTCTATCATGAAGCT
CGGGGAACAGACTGACCGCAGAATTTCCACTGTACCAAGCGGATCTCTTGCTCTTGATGCAGCTCTTGGGGTAGGCGGCT
ATCCAAGAGGACGTATTATTGAAGTCTATGGACCGGAGAGCTCAGGTAAAACAACAGTAGCCCTGCATGCTATTGCAGAA
GTTCAGGCAAGCGGCGGACAAGCAGCGTTTATCGATGCCGAACACGCCTTAGACCCTGTTTATGCACAAAAACTTGGTGT
GAATATTGACGAACTTCTTCTTTCTCAGCCGGATACCGGGGAGCAGGCGCTTGAAATTGCAGAAGCCCTTGTTCGAAGCG
GTGCTATTGATATTCTCGTAGTTGACTCTGTGGCAGCCCTTGTTCCCAAGGCTGAAATTGAAGGAGAAATGGGTGACTCC
CATGTGGGTCTGCAGGCCCGCCTTATGTCACAGGCACTTCGTAAGCTATCAGGCGCAATCAACAAATCAAAGACAATCGC
AATTTTCATTAACCAAATCCGTGAAAAAATCGGAATTATGTTTGGAAACCCTGAGACGACTCCAGGGGGACGCGCATTGA
AATTCTACTCTTCCATCCGCCTTGAAGTGCGCCGTGCAGAAACTCTTAAACAAGGCAATGAAATGGTTGGTAATAAGACA
AAGATTAAAGTTGTCAAAAATAAAGTCGCTCCTCCATTCCGAGTGGCGGAAGTTGACATCATGTACGGTGAAGGAATCTC
CAAGGAAGGTGAAATCATCGATCTTGGCTCTGAGCTGGATATTGTCCAAAAGAGCGGTTCATGGTACTCATTCAACGAGG
AGCGCTTAGGCCAAGGCCGTGAAAACGCCAAGGTATTCCTAAAAGAAAACCCTGAAATCCGCCTGACTATCCAAAAACAA
ATCCGCGAACATTATGGACTTGATGAAGAAAAAGTAGCCAGTGGAGACGAAGGGCAGGAAGAATTCGAGCTGATCGATTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

90.663

95.954

0.87
  recA Latilactobacillus sakei subsp. sakei 23K

73.7

94.509

0.697
  recA Streptococcus pneumoniae D39

67.353

98.266

0.662
  recA Streptococcus pneumoniae Rx1

67.353

98.266

0.662
  recA Streptococcus pneumoniae R6

67.353

98.266

0.662
  recA Streptococcus pneumoniae TIGR4

67.353

98.266

0.662
  recA Streptococcus mitis NCTC 12261

67.359

97.399

0.656
  recA Streptococcus mutans UA159

67.771

95.954

0.65
  recA Streptococcus mitis SK321

67.576

95.376

0.645
  recA Streptococcus pyogenes NZ131

66.463

94.798

0.63
  recA Lactococcus lactis subsp. cremoris KW2

64.392

97.399

0.627
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.158

98.844

0.624
  recA Neisseria gonorrhoeae MS11

65.749

94.509

0.621
  recA Neisseria gonorrhoeae MS11

65.749

94.509

0.621
  recA Neisseria gonorrhoeae strain FA1090

65.749

94.509

0.621
  recA Helicobacter pylori 26695

62.281

98.844

0.616
  recA Helicobacter pylori strain NCTC11637

62.281

98.844

0.616
  recA Vibrio cholerae strain A1552

65.421

92.775

0.607
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.421

92.775

0.607
  recA Ralstonia pseudosolanacearum GMI1000

66.773

90.462

0.604
  recA Acinetobacter baylyi ADP1

60.29

99.711

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.997

94.509

0.595
  recA Glaesserella parasuis strain SC1401

63.636

92.197

0.587
  recA Acinetobacter baumannii D1279779

63.043

93.064

0.587
  recA Pseudomonas stutzeri DSM 10701

63.125

92.486

0.584
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.25

92.486

0.566