Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QNH44_RS09625 Genome accession   NZ_CP126102
Coordinates   1837475..1838725 (+) Length   416 a.a.
NCBI ID   WP_163141660.1    Uniprot ID   -
Organism   Cytobacillus firmus strain LN5     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1832475..1843725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH44_RS09600 (QNH44_09600) - 1833436..1834158 (+) 723 WP_262172945.1 SDR family oxidoreductase -
  QNH44_RS09605 (QNH44_09605) - 1834274..1834531 (+) 258 WP_048008965.1 DUF3243 domain-containing protein -
  QNH44_RS09610 (QNH44_09610) - 1834765..1835556 (+) 792 WP_035330727.1 YmfK family protein -
  QNH44_RS09615 (QNH44_09615) - 1835578..1836483 (+) 906 WP_283914305.1 RodZ domain-containing protein -
  QNH44_RS09620 (QNH44_09620) pgsA 1836870..1837448 (+) 579 WP_035330725.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QNH44_RS09625 (QNH44_09625) cinA 1837475..1838725 (+) 1251 WP_163141660.1 competence/damage-inducible protein A Machinery gene
  QNH44_RS09630 (QNH44_09630) recA 1838999..1840039 (+) 1041 WP_283914306.1 recombinase RecA Machinery gene
  QNH44_RS09635 (QNH44_09635) rny 1840410..1841972 (+) 1563 WP_048008961.1 ribonuclease Y -
  QNH44_RS09640 (QNH44_09640) - 1842102..1842899 (+) 798 WP_163141658.1 TIGR00282 family metallophosphoesterase -
  QNH44_RS09645 (QNH44_09645) spoVS 1843232..1843492 (+) 261 WP_009330666.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45369.91 Da        Isoelectric Point: 4.7589

>NTDB_id=835994 QNH44_RS09625 WP_163141660.1 1837475..1838725(+) (cinA) [Cytobacillus firmus strain LN5]
MNAEIIAVGSELLLGQIVNTNARFLSRQLAELGINVFYHTVVGDNPERLRSVIKIAESRSDLIVFTGGLGPTKDDLTKET
IARHLGKELVMDEQALESIQLYFKRTNREMTENNKKQALVLEDAQVLPNEHGMAPGMIADSGRHVFMLLPGPPNEMEPMF
LKHAFPALQSKLGTEDVIVSRVLHFFGIGEAMLETEIEDIIDAQSNPTIAPLASDGEVTLRLTAKHSQPNTAMMLINEAE
TKILERVGEYFYGYDDTSLMYELTKLIKESSMTISAAESLTGGMFQEEFTSIPGAGGLLKGGVVCYTNEVKAEVLKVRKE
TIDNDGVVSAQCAAELAENVASLTNADIGISFTGVAGPDELEGNPVGTVYIGIWIKGRPVQTEKLNLGGTRAANRVRTVK
YGCHFLIKALKETQNA

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=835994 QNH44_RS09625 WP_163141660.1 1837475..1838725(+) (cinA) [Cytobacillus firmus strain LN5]
ATGAATGCTGAAATTATTGCTGTCGGGTCTGAGCTTTTGCTTGGACAAATCGTTAATACAAATGCCCGCTTTCTTTCCCG
GCAGCTTGCTGAACTGGGCATTAACGTTTTTTACCATACAGTGGTTGGAGATAACCCAGAGCGCCTGAGATCGGTGATCA
AAATAGCCGAAAGCCGTTCTGATTTGATCGTCTTCACGGGCGGCCTGGGACCGACAAAGGATGATTTAACAAAAGAAACG
ATTGCCCGCCATCTTGGCAAAGAGCTCGTCATGGACGAACAGGCGCTTGAATCTATACAGCTGTATTTTAAACGCACCAA
CAGAGAGATGACTGAGAATAATAAAAAACAGGCCCTGGTTCTTGAGGATGCACAGGTGCTTCCTAATGAGCATGGAATGG
CACCCGGAATGATTGCCGATAGTGGCCGGCATGTTTTCATGCTTCTTCCGGGGCCGCCAAACGAGATGGAGCCGATGTTC
CTTAAACATGCCTTTCCAGCCCTGCAATCCAAGCTGGGAACCGAGGATGTAATTGTTTCCCGGGTGCTGCACTTCTTCGG
GATTGGAGAAGCCATGCTGGAAACGGAGATTGAAGATATTATTGATGCTCAGAGCAATCCAACCATTGCCCCGCTTGCAT
CTGATGGGGAAGTTACTCTGAGGCTCACAGCAAAGCATAGTCAGCCTAACACGGCCATGATGCTGATTAATGAAGCTGAA
ACTAAAATTCTGGAGCGTGTCGGCGAATACTTCTATGGCTATGATGATACTTCCCTGATGTATGAGCTCACCAAGCTGAT
TAAGGAGAGCAGCATGACTATTTCGGCAGCGGAGAGTTTAACAGGCGGCATGTTCCAGGAGGAGTTTACATCCATTCCGG
GAGCCGGCGGACTTTTAAAGGGCGGAGTGGTCTGCTACACAAACGAAGTTAAGGCTGAAGTATTAAAAGTCCGCAAAGAA
ACGATTGATAACGACGGGGTCGTCAGTGCACAGTGTGCTGCCGAGCTTGCTGAGAATGTCGCAAGCCTTACAAATGCCGA
TATCGGTATCAGCTTCACAGGTGTTGCCGGTCCGGATGAATTAGAAGGCAACCCAGTCGGTACAGTATATATAGGCATTT
GGATAAAAGGAAGGCCGGTGCAGACCGAAAAGCTGAACCTTGGAGGTACCAGGGCAGCCAATCGGGTTCGTACAGTAAAA
TACGGCTGCCATTTTCTTATTAAAGCATTAAAAGAAACTCAGAACGCTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

61.314

98.798

0.606
  cinA Streptococcus mitis SK321

46.429

100

0.469
  cinA Streptococcus pneumoniae TIGR4

45.952

100

0.464
  cinA Streptococcus mitis NCTC 12261

45.952

100

0.464
  cinA Streptococcus mutans UA159

45.585

100

0.459
  cinA Streptococcus pneumoniae Rx1

45.476

100

0.459
  cinA Streptococcus pneumoniae R6

45.476

100

0.459
  cinA Streptococcus pneumoniae D39

45.238

100

0.457
  cinA Streptococcus suis isolate S10

38.931

94.471

0.368