Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QNH34_RS08555 Genome accession   NZ_CP126096
Coordinates   1696608..1697651 (+) Length   347 a.a.
NCBI ID   WP_073413586.1    Uniprot ID   -
Organism   Bacillus altitudinis strain G6S2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1691608..1702651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH34_RS08530 (QNH34_08530) - 1692392..1692649 (+) 258 WP_003211590.1 DUF3243 domain-containing protein -
  QNH34_RS08535 (QNH34_08535) - 1692781..1693572 (+) 792 WP_039166619.1 DUF3388 domain-containing protein -
  QNH34_RS08540 (QNH34_08540) - 1693596..1694507 (+) 912 WP_283933405.1 helix-turn-helix domain-containing protein -
  QNH34_RS08545 (QNH34_08545) pgsA 1694582..1695163 (+) 582 WP_008358030.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QNH34_RS08550 (QNH34_08550) cinA 1695180..1696430 (+) 1251 WP_283933406.1 competence/damage-inducible protein A Machinery gene
  QNH34_RS08555 (QNH34_08555) recA 1696608..1697651 (+) 1044 WP_073413586.1 recombinase RecA Machinery gene
  QNH34_RS08560 (QNH34_08560) rny 1697952..1699514 (+) 1563 WP_003211958.1 ribonuclease Y -
  QNH34_RS08565 (QNH34_08565) - 1699604..1700398 (+) 795 WP_008344680.1 TIGR00282 family metallophosphoesterase -
  QNH34_RS08570 (QNH34_08570) spoVS 1700601..1700861 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37804.95 Da        Isoelectric Point: 4.7701

>NTDB_id=835643 QNH34_RS08555 WP_073413586.1 1696608..1697651(+) (recA) [Bacillus altitudinis strain G6S2]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIMGNKT
RIKVVKNKVAPPFRIAEVDIMYGEGISKEGEIIDLGSELDIVQKSGAWYSYQEERLGQGRENAKQFLKENKDILLMIQEQ
IREHYGLDTNGVKATDEEGQEELELND

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=835643 QNH34_RS08555 WP_073413586.1 1696608..1697651(+) (recA) [Bacillus altitudinis strain G6S2]
ATGAGTGATCGTCAAGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTTGGTAAAGGCTCTATTATGAAACT
AGGAGAGCAAACAGATACACGTATTTCAACAGTACCTAGTGGTTCGTTAGCACTTGATACTGCGCTTGGAATAGGTGGAT
ACCCTCGCGGCCGTATTATTGAAGTATATGGTCCAGAGAGTTCTGGTAAAACGACAGTAGCACTTCATGCGATTGCTGAG
GTTCAGCAGCAGGGAGGACAAGCTGCATTTATCGATGCGGAGCATGCACTAGATCCAGTTTACGCTCAAAAATTAGGTGT
CAACATTGATGAGTTATTGCTTTCTCAGCCGGATACAGGAGAACAAGCGCTTGAAATTGCAGAAGCACTTGTTCGTAGTG
GTGCAGTTGATATTGTTGTCATTGACTCAGTAGCTGCTCTTGTACCAAAAGCAGAGATCGAAGGAGACATGGGAGATTCA
CACGTTGGTCTTCAAGCACGTTTGATGTCTCAAGCACTTCGTAAACTATCTGGTGCTATCAACAAATCAAAAACAATTGC
GATCTTTATTAACCAAATTCGTGAAAAAGTAGGGGTTATGTTTGGTAATCCTGAAACAACGCCTGGTGGACGTGCACTTA
AGTTCTATTCATCTGTTCGTTTAGAAGTACGCCGTGCTGAACAGTTGAAACAAGGGAACGACATCATGGGGAACAAAACG
AGAATTAAAGTTGTGAAAAACAAAGTGGCACCGCCATTCCGTATTGCCGAAGTAGACATTATGTACGGTGAAGGTATCTC
GAAAGAGGGAGAAATCATCGACCTTGGAAGCGAACTAGATATCGTACAAAAGAGCGGGGCTTGGTATTCTTATCAAGAGG
AACGTCTTGGACAAGGACGTGAAAATGCGAAGCAATTCCTAAAAGAGAATAAGGACATTCTTCTTATGATTCAGGAGCAG
ATCAGGGAGCACTACGGTTTGGATACAAACGGAGTGAAAGCAACTGACGAAGAAGGACAAGAAGAATTGGAATTGAATGA
CTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

96.687

95.677

0.925
  recA Latilactobacillus sakei subsp. sakei 23K

75.077

93.66

0.703
  recA Streptococcus mutans UA159

65

100

0.674
  recA Streptococcus pneumoniae D39

67.052

99.712

0.669
  recA Streptococcus pneumoniae Rx1

67.052

99.712

0.669
  recA Streptococcus pneumoniae R6

67.052

99.712

0.669
  recA Streptococcus pneumoniae TIGR4

67.052

99.712

0.669
  recA Streptococcus mitis NCTC 12261

69.091

95.101

0.657
  recA Streptococcus mitis SK321

68.788

95.101

0.654
  recA Streptococcus pyogenes NZ131

67.988

94.524

0.643
  recA Lactococcus lactis subsp. cremoris KW2

66.364

95.101

0.631
  recA Neisseria gonorrhoeae strain FA1090

63.798

97.118

0.62
  recA Neisseria gonorrhoeae MS11

63.798

97.118

0.62
  recA Neisseria gonorrhoeae MS11

63.798

97.118

0.62
  recA Helicobacter pylori strain NCTC11637

62.647

97.983

0.614
  recA Helicobacter pylori 26695

62.647

97.983

0.614
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.353

97.983

0.611
  recA Ralstonia pseudosolanacearum GMI1000

64.329

94.524

0.608
  recA Glaesserella parasuis strain SC1401

61.765

97.983

0.605
  recA Acinetobacter baumannii D1279779

62.13

97.406

0.605
  recA Acinetobacter baylyi ADP1

60.641

98.847

0.599
  recA Vibrio cholerae strain A1552

64.174

92.507

0.594
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.174

92.507

0.594
  recA Pseudomonas stutzeri DSM 10701

61.562

95.965

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

94.236

0.588
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.062

93.084

0.559