Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QNH34_RS08550 Genome accession   NZ_CP126096
Coordinates   1695180..1696430 (+) Length   416 a.a.
NCBI ID   WP_283933406.1    Uniprot ID   -
Organism   Bacillus altitudinis strain G6S2     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1690180..1701430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH34_RS08525 (QNH34_08525) - 1691591..1692319 (+) 729 WP_024720382.1 SDR family oxidoreductase -
  QNH34_RS08530 (QNH34_08530) - 1692392..1692649 (+) 258 WP_003211590.1 DUF3243 domain-containing protein -
  QNH34_RS08535 (QNH34_08535) - 1692781..1693572 (+) 792 WP_039166619.1 DUF3388 domain-containing protein -
  QNH34_RS08540 (QNH34_08540) - 1693596..1694507 (+) 912 WP_283933405.1 helix-turn-helix domain-containing protein -
  QNH34_RS08545 (QNH34_08545) pgsA 1694582..1695163 (+) 582 WP_008358030.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QNH34_RS08550 (QNH34_08550) cinA 1695180..1696430 (+) 1251 WP_283933406.1 competence/damage-inducible protein A Machinery gene
  QNH34_RS08555 (QNH34_08555) recA 1696608..1697651 (+) 1044 WP_073413586.1 recombinase RecA Machinery gene
  QNH34_RS08560 (QNH34_08560) rny 1697952..1699514 (+) 1563 WP_003211958.1 ribonuclease Y -
  QNH34_RS08565 (QNH34_08565) - 1699604..1700398 (+) 795 WP_008344680.1 TIGR00282 family metallophosphoesterase -
  QNH34_RS08570 (QNH34_08570) spoVS 1700601..1700861 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45554.76 Da        Isoelectric Point: 4.9836

>NTDB_id=835642 QNH34_RS08550 WP_283933406.1 1695180..1696430(+) (cinA) [Bacillus altitudinis strain G6S2]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKRAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQEYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFIQEGDTFYILLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEVLIDAQTNPTIAPLAADGEVTLRLTAKHEDEKETERLL
KETEAQILERVGEYFYGYGDTSLAFEASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILNGSVVCYTNQVKQQVLG
CRAETLSSHGAVSKECALELAEGVRKLTGSDIGISFTGVAGPEPHEGQPVGKVFIGLSTKDQTDVFEWMFTGSRSGIRKR
AVKYGLHHLLKLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=835642 QNH34_RS08550 WP_283933406.1 1695180..1696430(+) (cinA) [Bacillus altitudinis strain G6S2]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTTTTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAACTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AAAGGGCCATTCAAGTGGCACAGGAAAGATCGAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACGAAAGACGATTTA
ACAAAAGAAACCATTGCGAGTACGCTCGGTAAAGAGCTTGTGCTAAATGAAGAAGCATTTGAGTCTATTCAAGAATACTT
CCGTAAAACCGGACGTGATATGTCGCCGAACAACCGTAAACAGGCGCTCGTTCTAGAGGGATCTGATGTGCTCGTAAACC
GTTTCGGAATGGCACCTGGTATGTTTATACAAGAGGGAGATACGTTTTACATTCTGCTCCCTGGACCGCCAAGTGAATTG
CACCCGATGTTTGAAAATGAAGCGAAGCCGCTTATTTCTGAAAAACTCGGCCTAAAGGAAAAAATCGTGTCTGTTGTCTT
GCGTTTCTTTGGCATCGGTGAATCTCAGCTGGAAACAGATCTTGAAGTTTTAATTGATGCACAAACCAATCCAACGATTG
CACCGCTTGCAGCTGACGGGGAAGTGACGCTAAGGCTGACAGCCAAGCATGAGGATGAAAAAGAAACAGAGCGTCTGTTA
AAAGAAACAGAAGCACAAATTTTAGAACGGGTCGGCGAGTACTTCTACGGATATGGTGATACATCTCTTGCCTTTGAAGC
TTCAAAGGCCTTGCATGAACACGGGAAAACAGTAGCAGCGGCTGAAAGCCTGACTGGTGGTATGTTTTCAGAGTGGCTGA
CAGATCTCGAAGGGGCATCATCCATTTTAAACGGCAGTGTGGTTTGTTACACAAATCAAGTCAAGCAGCAAGTGCTGGGC
TGCCGTGCAGAAACATTGTCTTCTCATGGTGCTGTCAGCAAAGAGTGTGCGTTAGAGCTCGCAGAAGGCGTTAGAAAACT
GACGGGAAGCGATATCGGTATTAGCTTTACAGGTGTGGCAGGTCCTGAACCACACGAAGGACAGCCGGTTGGAAAAGTAT
TTATCGGGCTATCGACAAAAGACCAGACAGACGTGTTTGAATGGATGTTTACTGGCAGTCGATCAGGCATTCGCAAGCGT
GCTGTGAAATATGGTTTGCACCACCTTCTCAAATTATTAAAAGAAAGTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(262-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

74.458

99.76

0.743
  cinA Streptococcus pneumoniae TIGR4

47.608

100

0.478
  cinA Streptococcus mitis SK321

47.608

100

0.478
  cinA Streptococcus mitis NCTC 12261

47.368

100

0.476
  cinA Streptococcus pneumoniae Rx1

47.368

100

0.476
  cinA Streptococcus pneumoniae R6

47.368

100

0.476
  cinA Streptococcus pneumoniae D39

47.129

100

0.474
  cinA Streptococcus mutans UA159

47.912

97.837

0.469
  cinA Streptococcus suis isolate S10

43.122

90.865

0.392