Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QNK09_RS15975 Genome accession   NZ_CP126078
Coordinates   3338247..3339305 (-) Length   352 a.a.
NCBI ID   WP_025846053.1    Uniprot ID   A0A9X7T1J1
Organism   Brevibacillus agri strain ACCC03016     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3333247..3344305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK09_RS15950 (QNK09_15950) - 3333678..3334346 (-) 669 WP_025846049.1 membrane dipeptidase -
  QNK09_RS15955 (QNK09_15955) spoVS 3334454..3334714 (-) 261 WP_003385776.1 stage V sporulation protein SpoVS -
  QNK09_RS15960 (QNK09_15960) - 3334833..3335627 (-) 795 WP_005834087.1 TIGR00282 family metallophosphoesterase -
  QNK09_RS15965 (QNK09_15965) rny 3335702..3337243 (-) 1542 WP_005834089.1 ribonuclease Y -
  QNK09_RS15970 (QNK09_15970) - 3337524..3338171 (-) 648 WP_283857877.1 RecX family transcriptional regulator -
  QNK09_RS15975 (QNK09_15975) recA 3338247..3339305 (-) 1059 WP_025846053.1 recombinase RecA Machinery gene
  QNK09_RS15980 (QNK09_15980) - 3339475..3341064 (-) 1590 WP_007786887.1 DEAD/DEAH box helicase -
  QNK09_RS15985 (QNK09_15985) cinA 3341072..3342316 (-) 1245 WP_007786885.1 competence/damage-inducible protein A Machinery gene
  QNK09_RS15990 (QNK09_15990) pgsA 3342425..3343000 (-) 576 WP_005834099.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37748.08 Da        Isoelectric Point: 4.9005

>NTDB_id=834627 QNK09_RS15975 WP_025846053.1 3338247..3339305(-) (recA) [Brevibacillus agri strain ACCC03016]
MSDRRAALESALRQIEKQFGKGSIMKLGEVSNVQISTVSSGALALDIALGVGGFPRGRIVEIYGPESSGKTTVALHAIAE
VQRQGGQAAFIDAEHALDPVYAAKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRKAEAIKVGNDIMGSKT
KIKVVKNKVAPPFKVAEVDIMYGEGISKEGSILDIGSEIDVVQKSGAWYSFNEERLGQGRENSKVFLKENPHIAAQIEAK
VREYFSLNPGSVPEAEPVIDPEQEEEPAFDLD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=834627 QNK09_RS15975 WP_025846053.1 3338247..3339305(-) (recA) [Brevibacillus agri strain ACCC03016]
TTGTCAGATCGTCGCGCAGCTTTGGAGAGTGCATTGCGTCAAATAGAAAAGCAATTTGGAAAAGGTTCCATCATGAAGTT
GGGAGAAGTGTCCAACGTTCAGATTTCTACCGTTTCCAGTGGAGCGTTAGCTTTGGATATCGCATTGGGTGTGGGTGGAT
TCCCGCGCGGCCGGATCGTCGAGATTTACGGTCCAGAGTCTTCCGGTAAAACAACCGTAGCACTGCATGCCATCGCAGAA
GTGCAAAGACAAGGCGGACAAGCAGCTTTCATCGATGCCGAGCACGCGCTGGACCCTGTCTATGCAGCGAAGCTGGGCGT
GAACATTGACGAGCTGCTGCTCTCCCAGCCGGATACCGGGGAGCAAGCATTGGAAATTGCCGAGGCGCTCGTACGCTCCG
GTGCAGTCGATATCATTGTCGTGGACTCGGTAGCGGCGCTCGTTCCGAAGGCAGAGATTGAAGGCGAAATGGGAGACTCC
CACGTAGGTCTGCAAGCCCGCCTCATGTCGCAAGCCCTGCGCAAGCTGTCCGGTGCGATCAACAAGTCCAAGACGATTGC
GATCTTCATCAACCAGTTGCGTGAAAAAGTAGGCGTGATGTTCGGGAACCCGGAAACAACTCCTGGTGGACGCGCCCTGA
AGTTCTACGCGAGCGTGCGCCTCGATGTCCGCAAAGCCGAAGCGATCAAAGTCGGCAACGACATCATGGGTAGCAAGACC
AAGATCAAAGTCGTGAAAAACAAAGTAGCGCCACCGTTCAAGGTCGCTGAAGTGGACATCATGTACGGGGAAGGGATCTC
CAAAGAGGGCAGCATCCTCGATATCGGTTCCGAAATCGACGTCGTGCAAAAAAGCGGTGCGTGGTACTCCTTCAACGAGG
AGCGCCTCGGCCAAGGACGGGAAAACTCGAAAGTCTTCCTCAAGGAAAACCCGCATATTGCAGCGCAGATCGAGGCAAAA
GTTCGCGAGTACTTCAGCCTCAACCCTGGTTCCGTTCCAGAGGCAGAGCCGGTGATCGATCCGGAGCAAGAGGAAGAGCC
AGCATTTGACCTCGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

82.229

94.318

0.776
  recA Latilactobacillus sakei subsp. sakei 23K

70.76

97.159

0.687
  recA Streptococcus pyogenes NZ131

66.667

100

0.67
  recA Streptococcus mitis SK321

69.369

94.602

0.656
  recA Streptococcus mitis NCTC 12261

69.369

94.602

0.656
  recA Streptococcus pneumoniae Rx1

69.369

94.602

0.656
  recA Streptococcus pneumoniae D39

69.369

94.602

0.656
  recA Streptococcus pneumoniae R6

69.369

94.602

0.656
  recA Streptococcus pneumoniae TIGR4

69.369

94.602

0.656
  recA Lactococcus lactis subsp. cremoris KW2

68.788

93.75

0.645
  recA Streptococcus mutans UA159

68.693

93.466

0.642
  recA Ralstonia pseudosolanacearum GMI1000

66.769

92.33

0.616
  recA Vibrio cholerae strain A1552

65.749

92.898

0.611
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.749

92.898

0.611
  recA Acinetobacter baylyi ADP1

60.92

98.864

0.602
  recA Glaesserella parasuis strain SC1401

63.855

94.318

0.602
  recA Acinetobacter baumannii D1279779

60.286

99.432

0.599
  recA Neisseria gonorrhoeae MS11

65.421

91.193

0.597
  recA Neisseria gonorrhoeae MS11

65.421

91.193

0.597
  recA Neisseria gonorrhoeae strain FA1090

65.421

91.193

0.597
  recA Pseudomonas stutzeri DSM 10701

60.933

97.443

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

92.898

0.58
  recA Helicobacter pylori strain NCTC11637

59.012

97.727

0.577
  recA Helicobacter pylori 26695

58.721

97.727

0.574
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.928

91.193

0.574
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.187

90.909

0.565