Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QNK09_RS15985 Genome accession   NZ_CP126078
Coordinates   3341072..3342316 (-) Length   414 a.a.
NCBI ID   WP_007786885.1    Uniprot ID   A0A3M8BA79
Organism   Brevibacillus agri strain ACCC03016     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3336072..3347316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK09_RS15970 (QNK09_15970) - 3337524..3338171 (-) 648 WP_283857877.1 RecX family transcriptional regulator -
  QNK09_RS15975 (QNK09_15975) recA 3338247..3339305 (-) 1059 WP_025846053.1 recombinase RecA Machinery gene
  QNK09_RS15980 (QNK09_15980) - 3339475..3341064 (-) 1590 WP_007786887.1 DEAD/DEAH box helicase -
  QNK09_RS15985 (QNK09_15985) cinA 3341072..3342316 (-) 1245 WP_007786885.1 competence/damage-inducible protein A Machinery gene
  QNK09_RS15990 (QNK09_15990) pgsA 3342425..3343000 (-) 576 WP_005834099.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QNK09_RS15995 (QNK09_15995) rimO 3343001..3344347 (-) 1347 WP_005834102.1 30S ribosomal protein S12 methylthiotransferase RimO -
  QNK09_RS16000 (QNK09_16000) - 3344460..3345368 (-) 909 WP_025846058.1 helix-turn-helix domain-containing protein -
  QNK09_RS16005 (QNK09_16005) - 3345381..3346160 (-) 780 WP_005834105.1 YmfK family protein -
  QNK09_RS16010 (QNK09_16010) - 3346269..3346538 (-) 270 WP_005834108.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44780.23 Da        Isoelectric Point: 4.9954

>NTDB_id=834628 QNK09_RS15985 WP_007786885.1 3341072..3342316(-) (cinA) [Brevibacillus agri strain ACCC03016]
MRAEIIAVGTELLLGQIANTNAQFLSQKLAEIGVGVYFHTVVGDNSERLRQVIALASGRSDLVILTGGLGPTQDDLTKET
VAAHVGVGLETNQEAMERIEQFFLQRGIVMTENNRKQALVLSGSHVFSNDFGMAPGMAIRHDSCTFVLLPGPPSELYPMV
DRYVMPYLTDLLPEKQVFHSHVLRFYGIGESALEERLLDLIEKQDNPTIAPYAKEFEVTLRLTARAATAEEGEALILPVE
EEIRKRVGEYVYGMGEDSSLHAVLVSELKKRNETIACAESCTGGTVASLITSVPGSSSVFQGGVVCYTNDVKNRLLDVPE
EVLNTDGAVSRQTAQLLAENVRAKLGATYGVSVTGVAGPDPSEGKPVGLVYVGIAGEGMPTVVKELRLAGRRQAIVGRAA
KFALFYALQMQKER

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=834628 QNK09_RS15985 WP_007786885.1 3341072..3342316(-) (cinA) [Brevibacillus agri strain ACCC03016]
ATGAGAGCGGAGATTATCGCAGTAGGTACCGAGCTTTTGCTAGGCCAAATTGCCAACACAAATGCCCAGTTTCTGTCGCA
GAAGCTGGCGGAAATTGGCGTGGGAGTCTATTTCCATACGGTTGTGGGAGATAACTCAGAGCGATTGCGGCAGGTCATTG
CGCTCGCATCCGGCCGATCCGATCTCGTCATTTTGACAGGGGGGCTTGGACCGACCCAGGATGACCTGACAAAAGAAACG
GTGGCAGCACACGTGGGCGTCGGGCTGGAAACGAACCAGGAAGCCATGGAAAGAATTGAACAATTCTTTTTGCAACGTGG
GATTGTCATGACGGAGAACAATCGGAAGCAGGCGCTGGTGCTCTCAGGCAGCCATGTCTTTTCCAACGACTTCGGGATGG
CGCCTGGGATGGCGATCCGTCATGACAGTTGTACGTTCGTGCTGCTCCCTGGACCGCCGAGCGAGCTGTACCCGATGGTG
GATCGCTACGTGATGCCGTACTTGACAGACCTGTTGCCAGAGAAGCAAGTATTCCATTCCCATGTGCTGCGCTTCTACGG
AATCGGGGAATCCGCTCTGGAGGAGCGGCTGCTGGATTTGATTGAAAAGCAGGACAACCCGACGATCGCGCCGTATGCCA
AGGAGTTTGAAGTGACGCTCAGGCTCACGGCGAGAGCGGCTACGGCAGAAGAAGGGGAAGCGCTGATTTTGCCGGTGGAA
GAAGAAATTCGCAAGCGTGTTGGCGAGTATGTGTACGGGATGGGAGAAGATTCGTCCCTGCATGCCGTCTTGGTGAGCGA
GCTGAAAAAGCGAAACGAAACGATCGCATGTGCGGAAAGCTGTACAGGCGGCACGGTCGCTTCGCTGATTACGTCCGTTC
CCGGCAGCTCGTCTGTTTTTCAAGGCGGCGTAGTCTGTTATACAAACGATGTGAAAAACCGGCTGCTTGACGTGCCCGAA
GAGGTTTTGAATACGGACGGTGCGGTCAGTCGGCAAACGGCGCAGTTGCTTGCAGAAAATGTGCGAGCCAAGCTGGGAGC
CACATACGGCGTGTCCGTGACGGGTGTGGCTGGACCCGACCCTTCGGAGGGCAAGCCTGTTGGCCTTGTCTACGTCGGAA
TTGCGGGTGAAGGGATGCCCACAGTAGTAAAAGAACTGCGCCTGGCTGGCAGAAGACAGGCGATTGTTGGGCGTGCCGCC
AAATTTGCGCTATTTTATGCGCTGCAAATGCAAAAAGAAAGGTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(259-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3M8BA79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.574

99.758

0.514
  cinA Streptococcus mitis SK321

47.458

99.758

0.473
  cinA Streptococcus mitis NCTC 12261

47.458

99.758

0.473
  cinA Streptococcus pneumoniae TIGR4

47.215

99.758

0.471
  cinA Streptococcus pneumoniae Rx1

46.973

99.758

0.469
  cinA Streptococcus pneumoniae R6

46.973

99.758

0.469
  cinA Streptococcus pneumoniae D39

46.731

99.758

0.466
  cinA Streptococcus mutans UA159

45.614

96.377

0.44
  cinA Streptococcus suis isolate S10

41.013

95.411

0.391