Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QMA14_RS02210 Genome accession   NZ_CP125087
Coordinates   442233..443288 (+) Length   351 a.a.
NCBI ID   WP_049371683.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain EL1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 437233..448288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMA14_RS02200 (QMA14_02200) sxy/tfoX 440355..441023 (-) 669 WP_005695053.1 TfoX/Sxy family DNA transformation protein Regulator
  QMA14_RS02205 (QMA14_02205) - 441254..442096 (+) 843 WP_005695052.1 patatin family protein -
  QMA14_RS02210 (QMA14_02210) recA 442233..443288 (+) 1056 WP_049371683.1 recombinase RecA Machinery gene
  QMA14_RS02215 (QMA14_02215) recX 443358..443810 (+) 453 WP_032827499.1 recombination regulator RecX -
  QMA14_RS02220 (QMA14_02220) crcB 443785..444180 (-) 396 WP_005699075.1 fluoride efflux transporter CrcB -
  QMA14_RS02225 (QMA14_02225) - 444181..444999 (-) 819 WP_284174109.1 Cof-type HAD-IIB family hydrolase -
  QMA14_RS02230 (QMA14_02230) tuf 445153..446337 (-) 1185 WP_005635637.1 elongation factor Tu -
  QMA14_RS02255 (QMA14_02255) coaA 447042..447977 (+) 936 WP_284174110.1 type I pantothenate kinase -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37573.07 Da        Isoelectric Point: 4.9529

>NTDB_id=829889 QMA14_RS02210 WP_049371683.1 442233..443288(+) (recA) [Haemophilus parainfluenzae strain EL1]
MATQEEKQKALAAALGQIEKQFGKGSIMKLGDTQALDVESVSTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSV
IAQAQKVGKTCAFIDAEHALDPIYAAKLGVDVKELLVSQPDNGEQALEICDALVRSGAVDVVIVDSVAALTPKAEIEGEM
GDSHMGLQARLMSQALRKLTGQIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKDGDEVIG
NETRVKVVKNKLAAPFRQVDFQILYGEGISKAGELIELGVKHKLVEKSGAWYAYNGEKIGQGKANAMKWLHENLAKSDEL
EAKLRAELVANPEQALMADIEQSTDDAESDF

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=829889 QMA14_RS02210 WP_049371683.1 442233..443288(+) (recA) [Haemophilus parainfluenzae strain EL1]
ATGGCAACTCAAGAAGAAAAGCAAAAAGCGCTCGCCGCAGCACTTGGTCAAATTGAAAAGCAATTCGGTAAAGGCTCAAT
TATGAAATTGGGTGATACTCAAGCCCTTGATGTAGAATCTGTTTCAACTGGTTCTTTAGGTCTTGATGTCGCTCTTGGTA
TTGGTGGTTTACCAATGGGTCGTATTGTTGAAATTTTTGGACCTGAATCTTCTGGTAAAACAACTTTAACTTTATCTGTT
ATCGCTCAAGCACAAAAAGTAGGTAAAACTTGTGCGTTTATTGATGCGGAGCATGCGCTTGATCCTATTTATGCAGCAAA
ACTTGGTGTTGATGTTAAAGAACTTTTAGTCTCCCAGCCAGATAATGGTGAACAAGCACTTGAAATTTGTGATGCATTAG
TACGTTCTGGCGCTGTAGATGTCGTCATTGTGGACTCGGTTGCTGCACTTACCCCGAAAGCTGAAATTGAAGGCGAAATG
GGTGATTCACACATGGGTTTACAAGCGCGTTTAATGTCTCAAGCGCTACGTAAATTAACTGGTCAAATCAAAAATGCAAA
CTGCCTTGTTATCTTTATTAACCAAATTCGTATGAAAATAGGTGTCATGTTTGGTAACCCAGAAACCACAACTGGTGGTA
ACGCGCTAAAATTCTACTCTTCTGTTCGTTTAGATATCCGTCGTACTGGTTCAGTTAAAGATGGAGATGAGGTAATTGGT
AACGAAACTCGTGTTAAAGTCGTAAAAAATAAATTAGCAGCACCTTTCCGCCAAGTTGATTTCCAAATTCTTTACGGAGA
AGGGATTTCCAAAGCTGGAGAATTAATTGAACTCGGTGTTAAACACAAACTTGTTGAGAAATCTGGTGCGTGGTATGCAT
ATAACGGTGAAAAAATTGGTCAAGGTAAAGCTAATGCAATGAAATGGTTACATGAAAACCTTGCGAAATCAGACGAACTT
GAAGCGAAGCTTCGTGCTGAATTAGTCGCTAACCCAGAACAAGCATTAATGGCTGATATTGAACAATCTACCGATGACGC
AGAAAGTGATTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

76.232

98.291

0.749
  recA Vibrio cholerae O1 biovar El Tor strain E7946

76.232

98.291

0.749
  recA Glaesserella parasuis strain SC1401

75.872

98.006

0.744
  recA Pseudomonas stutzeri DSM 10701

73.837

98.006

0.724
  recA Acinetobacter baylyi ADP1

69.741

98.86

0.689
  recA Neisseria gonorrhoeae MS11

74.613

92.023

0.687
  recA Neisseria gonorrhoeae MS11

74.613

92.023

0.687
  recA Neisseria gonorrhoeae strain FA1090

74.613

92.023

0.687
  recA Ralstonia pseudosolanacearum GMI1000

73.041

90.883

0.664
  recA Acinetobacter baumannii D1279779

71.385

92.593

0.661
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.687

95.442

0.598
  recA Helicobacter pylori 26695

61.471

96.866

0.595
  recA Helicobacter pylori strain NCTC11637

60.882

96.866

0.59
  recA Bacillus subtilis subsp. subtilis str. 168

66.234

87.749

0.581
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.407

90.313

0.573
  recA Streptococcus pneumoniae Rx1

56.571

99.715

0.564
  recA Streptococcus pneumoniae D39

56.571

99.715

0.564
  recA Streptococcus pneumoniae TIGR4

56.571

99.715

0.564
  recA Streptococcus pneumoniae R6

56.571

99.715

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.245

93.162

0.561
  recA Latilactobacillus sakei subsp. sakei 23K

60.062

92.023

0.553
  recA Streptococcus mutans UA159

59.327

93.162

0.553
  recA Streptococcus mitis NCTC 12261

59.021

93.162

0.55
  recA Streptococcus mitis SK321

58.716

93.162

0.547
  recA Streptococcus pyogenes NZ131

58.232

93.447

0.544
  recA Lactococcus lactis subsp. cremoris KW2

58.462

92.593

0.541