Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QMA14_RS02200 Genome accession   NZ_CP125087
Coordinates   440355..441023 (-) Length   222 a.a.
NCBI ID   WP_005695053.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain EL1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 435355..446023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMA14_RS02200 (QMA14_02200) sxy/tfoX 440355..441023 (-) 669 WP_005695053.1 TfoX/Sxy family DNA transformation protein Regulator
  QMA14_RS02205 (QMA14_02205) - 441254..442096 (+) 843 WP_005695052.1 patatin family protein -
  QMA14_RS02210 (QMA14_02210) recA 442233..443288 (+) 1056 WP_049371683.1 recombinase RecA Machinery gene
  QMA14_RS02215 (QMA14_02215) recX 443358..443810 (+) 453 WP_032827499.1 recombination regulator RecX -
  QMA14_RS02220 (QMA14_02220) crcB 443785..444180 (-) 396 WP_005699075.1 fluoride efflux transporter CrcB -
  QMA14_RS02225 (QMA14_02225) - 444181..444999 (-) 819 WP_284174109.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25484.96 Da        Isoelectric Point: 10.3912

>NTDB_id=829888 QMA14_RS02200 WP_005695053.1 440355..441023(-) (sxy/tfoX) [Haemophilus parainfluenzae strain EL1]
MKILTIPNDNIIRVCNLLNQLIGDVTSKNLFTGYGLFHKDKDMFAVWINNKVYLRAKGELSVKLKGLGCKAFATNELNKR
FVLSDYYALTESILKDNVLMRTLIILSITQIRKEKLESALSKIGRIRDLPNLSIKYERALKKVGIDNVDILRQIGAENAI
VRLKKADIGATEAFYWRLRGALENRNCEFYTEKEKEKGLNKLNEILSANGFRRCKRTLKKVE

Nucleotide


Download         Length: 669 bp        

>NTDB_id=829888 QMA14_RS02200 WP_005695053.1 440355..441023(-) (sxy/tfoX) [Haemophilus parainfluenzae strain EL1]
ATGAAAATCCTAACAATACCCAATGATAATATTATCAGAGTGTGTAATTTGCTAAATCAACTGATTGGAGATGTAACAAG
CAAAAACCTATTTACTGGATATGGATTATTCCATAAAGATAAGGATATGTTTGCTGTTTGGATTAATAATAAGGTTTACT
TGAGGGCTAAAGGTGAACTTTCTGTAAAATTAAAAGGGCTGGGCTGCAAAGCCTTTGCAACAAATGAACTCAATAAACGC
TTTGTGTTATCTGATTATTATGCTTTAACTGAAAGTATCTTGAAAGATAATGTCTTAATGAGAACTTTGATCATTCTTTC
AATAACTCAAATAAGGAAGGAAAAACTCGAGTCTGCGCTCTCTAAGATTGGACGGATTCGTGATTTACCGAATTTATCTA
TTAAATATGAACGAGCACTAAAGAAAGTCGGTATTGATAATGTGGATATCTTACGACAAATAGGTGCTGAAAATGCAATT
GTTCGTTTGAAAAAAGCGGATATTGGTGCAACTGAAGCTTTTTATTGGCGACTTCGTGGCGCTTTAGAAAATCGTAATTG
TGAGTTTTATACTGAGAAAGAAAAGGAGAAAGGGCTTAATAAACTTAATGAAATACTTTCTGCAAATGGATTTAGGCGCT
GTAAACGGACTTTAAAAAAGGTTGAATAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(125-198)

TfoX N-terminal domain (TfoX_N)

(17-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

58.373

94.144

0.55