Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   R8559_RS06660 Genome accession   NZ_AP026926
Coordinates   1290723..1291292 (-) Length   189 a.a.
NCBI ID   WP_224781988.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700119     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1285723..1296292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8559_RS06640 - 1286270..1286936 (-) 667 Protein_1315 winged helix-turn-helix domain-containing protein -
  R8559_RS06645 (PC0116_13110) gdhA 1287276..1288622 (+) 1347 WP_000199575.1 NADP-specific glutamate dehydrogenase -
  R8559_RS06650 (PC0116_13120) - 1288701..1289957 (-) 1257 WP_000436627.1 ISL3 family transposase -
  R8559_RS06655 (PC0116_13130) - 1290540..1290710 (-) 171 WP_000711943.1 hypothetical protein -
  R8559_RS06660 (PC0116_13140) comA 1290723..1291292 (-) 570 WP_224781988.1 ATP-binding cassette domain-containing protein Regulator
  R8559_RS06665 (PC0116_13150) - 1291318..1291581 (-) 264 Protein_1320 transposase family protein -
  R8559_RS06670 - 1291580..1291867 (+) 288 Protein_1321 transposase -
  R8559_RS06675 (PC0116_13160) - 1292167..1292385 (-) 219 Protein_1322 hypothetical protein -
  R8559_RS06680 (PC0116_13180) - 1293179..1293316 (-) 138 WP_000718654.1 hypothetical protein -
  R8559_RS06685 (PC0116_13190) - 1293449..1294768 (-) 1320 WP_050200187.1 FtsX-like permease family protein -
  R8559_RS06690 (PC0116_13200) - 1294771..1295511 (-) 741 WP_000356590.1 ABC transporter ATP-binding protein -
  R8559_RS06695 (PC0116_13210) - 1295560..1296144 (-) 585 WP_001811807.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 21062.47 Da        Isoelectric Point: 8.4331

>NTDB_id=82810 R8559_RS06660 WP_224781988.1 1290723..1291292(-) (comA) [Streptococcus pneumoniae strain PZ900700119]
MPSGLYKIDTGKVLFDGVNINQIDKKILSQNLGVVPQDSFLLNRSILDNITLKHEVTSQKIEEVCKAVQIYDEIMAMPMK
FNTIISEMGSNISGGQRQRIALARALINNPSVVILDEATSALDTINEERITKYIKSQGCTQIIVAHRLSTIKDADIIVVM
KGGKIVESGNHKYLMDLGGEYYSLYTKRK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=82810 R8559_RS06660 WP_224781988.1 1290723..1291292(-) (comA) [Streptococcus pneumoniae strain PZ900700119]
ATACCATCAGGATTATATAAGATTGATACAGGAAAAGTTTTATTTGATGGTGTAAATATTAATCAAATAGATAAAAAAAT
ATTAAGTCAAAATTTAGGAGTAGTTCCACAGGATTCGTTTTTATTGAACAGAAGTATTCTTGATAACATAACTTTAAAGC
ACGAAGTTACTTCACAAAAGATAGAGGAAGTTTGTAAAGCAGTTCAAATCTATGATGAAATCATGGCTATGCCGATGAAA
TTTAATACTATCATCTCAGAGATGGGTTCAAATATTTCAGGTGGTCAAAGACAACGGATAGCACTGGCACGTGCATTAAT
AAATAATCCTAGTGTTGTAATTTTAGATGAAGCAACTAGTGCTTTAGACACTATTAATGAGGAAAGAATAACAAAGTATA
TAAAAAGTCAGGGCTGTACTCAAATAATTGTAGCTCATAGATTGTCAACGATTAAGGATGCGGATATTATTGTTGTAATG
AAAGGTGGTAAGATTGTTGAGTCAGGAAATCATAAGTACTTAATGGATCTTGGTGGAGAGTACTACAGCTTATATACAAA
AAGGAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis NCTC 12261

43.011

98.413

0.423
  comA Streptococcus gordonii str. Challis substr. CH1

42.935

97.354

0.418
  comA/nlmT Streptococcus mutans UA159

42.391

97.354

0.413
  comA Streptococcus pneumoniae Rx1

41.935

98.413

0.413
  comA Streptococcus pneumoniae D39

41.935

98.413

0.413
  comA Streptococcus pneumoniae R6

41.935

98.413

0.413
  comA Streptococcus mitis SK321

41.398

98.413

0.407
  comA Streptococcus pneumoniae TIGR4

40.86

98.413

0.402

Multiple sequence alignment